Atomistry » Caesium » PDB 6dzo-7jmq » 7bmq
Atomistry »
  Caesium »
    PDB 6dzo-7jmq »
      7bmq »

Caesium in PDB 7bmq: Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)

Enzymatic activity of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)

All present enzymatic activity of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant):
3.2.1.17;

Protein crystallography data

The structure of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant), PDB code: 7bmq was solved by W.Koelmel, J.Kuper, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.38 / 1.79
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.753, 78.753, 36.812, 90, 90, 90
R / Rfree (%) 20.9 / 25.7

Other elements in 7bmq:

The structure of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Caesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Caesium atom in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) (pdb code 7bmq). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 15 binding sites of Caesium where determined in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant), PDB code: 7bmq:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Caesium binding site 1 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 1 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs205

b:31.1
occ:0.37
 OG A:SER90 2.7 38.4 1.0
O A:SER90 2.7 25.6 1.0
CS A:CS213 3.1 39.5 0.3
O A:HOH386 3.1 30.7 0.5
O A:HOH303 3.2 27.2 1.0
C A:SER90 3.5 33.6 1.0
O A:HOH383 3.6 8.9 1.0
N A:SER90 3.6 39.3 1.0
CB A:SER90 3.8 37.4 1.0
CA A:SER90 3.8 35.8 1.0
O A:THR87 4.0 16.4 1.0
CL A:CL203 4.4 41.6 1.0
C A:GLY89 4.5 38.2 1.0
N A:GLY89 4.6 31.6 1.0
N A:ARG91 4.6 26.0 1.0
OD1 A:ASN83 4.6 18.7 1.0
O A:HOH302 4.8 31.2 1.0
O A:HOH340 4.9 14.1 1.0

Caesium binding site 2 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 2 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs206

b:39.6
occ:0.81
 ND2 A:ASN95 2.8 24.0 1.0
O A:ASN92 2.9 15.0 1.0
O A:ARG91 3.4 25.7 1.0
O A:HOH301 3.4 28.8 1.0
O A:HOH423 3.8 40.7 1.0
CG A:ASN95 3.8 26.6 1.0
C A:ASN92 3.9 16.4 1.0
OD1 A:ASN95 4.2 29.2 1.0
CB A:ASN92 4.4 17.1 1.0
C A:ARG91 4.5 22.5 1.0
CA A:ASN92 4.6 17.3 1.0
N A:LEU93 4.7 17.1 1.0
CA A:LEU93 4.8 18.9 1.0
CG A:ASN92 4.8 16.5 1.0
CB A:ASN95 4.8 23.3 1.0
CA A:ASN95 4.9 22.4 1.0
ND2 A:ASN92 5.0 17.1 1.0

Caesium binding site 3 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 3 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs207

b:44.9
occ:0.45
 O A:CYS94 3.2 22.4 1.0
O A:ASN95 3.4 20.4 1.0
O A:HOH413 3.8 21.2 1.0
O A:HOH359 3.9 23.5 1.0
C A:ASN95 4.1 22.3 1.0
O A:HOH356 4.3 26.2 1.0
CB A:ASN95 4.4 23.3 1.0
C A:CYS94 4.4 19.3 1.0
CD1 A:ILE96 4.5 33.3 1.0
CA A:ASN95 4.7 22.4 1.0
CB A:ILE96 4.7 26.3 1.0
O A:HOH307 4.8 35.2 1.0
N A:ILE96 4.9 22.2 1.0

Caesium binding site 4 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 4 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs208

b:34.5
occ:0.43
 OD2 A:ASP70 3.0 16.5 1.0
O A:HOH358 3.0 28.2 1.0
CS A:CS211 3.3 33.5 0.4
OE1 A:GLU53 3.3 12.6 1.0
O A:HOH412 3.4 21.8 1.0
OE1 A:GLN75 3.5 10.7 1.0
CS A:CS218 3.8 64.3 0.4
CB A:GLN75 3.8 12.4 1.0
CG A:GLN75 3.9 11.6 1.0
O A:HOH322 4.1 24.6 1.0
CG A:ASP70 4.1 14.0 1.0
CD A:GLN75 4.2 11.6 1.0
CB A:ASP70 4.3 12.3 1.0
O A:HOH306 4.5 14.6 1.0
CD A:GLU53 4.6 12.1 1.0
O A:HOH330 4.6 19.4 1.0
O A:HOH332 4.6 27.7 1.0
CB A:ASN62 4.8 20.8 1.0
O A:GLU53 4.8 12.7 1.0
ND2 A:ASN62 4.9 22.8 1.0

Caesium binding site 5 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 5 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs209

b:35.4
occ:0.89
 OD1 A:ASN62 3.2 24.8 1.0
CG A:ASN62 4.2 24.2 1.0
ND2 A:ASN62 4.9 22.8 1.0

Caesium binding site 6 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 6 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs210

b:34.8
occ:0.35
 O A:ARG63 3.2 24.8 1.0
C A:ARG63 4.3 21.7 1.0
N A:ARG63 4.4 18.9 1.0
CA A:ARG63 4.8 21.2 0.5
CB A:ARG63 4.8 23.9 0.5
CA A:ARG63 4.8 20.2 0.5
CB A:ASN62 5.0 20.8 1.0

Caesium binding site 7 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 7 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 7 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs211

b:33.5
occ:0.38
 CS A:CS218 2.6 64.3 0.4
OD1 A:ASN64 2.8 24.8 1.0
CS A:CS208 3.3 34.5 0.4
OD2 A:ASP70 3.4 16.5 1.0
CB A:ASN62 3.9 20.8 1.0
CG A:ASN64 4.0 25.3 1.0
O A:ARG63 4.0 24.8 1.0
O A:ASN62 4.1 14.2 1.0
CG A:ASP70 4.2 14.0 1.0
O A:HOH332 4.4 27.7 1.0
C A:ASN62 4.4 17.7 1.0
C A:ARG63 4.4 21.7 1.0
CA A:ASN64 4.6 24.2 1.0
CB A:ASP70 4.6 12.3 1.0
N A:ASN64 4.6 22.5 1.0
O A:HOH399 4.7 28.3 1.0
ND2 A:ASN64 4.8 23.8 1.0
CB A:ASN64 4.8 25.9 1.0
CA A:ASN62 4.8 17.9 1.0
OD1 A:ASP70 5.0 15.3 1.0

Caesium binding site 8 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 8 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 8 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs212

b:44.0
occ:0.27
 O A:ALA125 3.1 14.3 1.0
O A:HOH368 3.2 30.5 1.0
O A:HOH374 3.7 11.7 1.0
O A:HOH347 3.8 21.0 1.0
O1 A:EDO204 3.8 26.2 1.0
C A:ALA125 4.2 13.4 1.0
C1 A:EDO204 4.4 21.2 1.0
CG2 A:VAL127 4.5 14.7 1.0
CA A:ALA125 4.6 12.7 1.0

Caesium binding site 9 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 9 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 9 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs213

b:39.5
occ:0.28
 CL A:CL203 2.9 41.6 1.0
OD1 A:ASN83 3.1 18.7 1.0
CS A:CS205 3.1 31.1 0.4
O A:HOH383 3.4 8.9 1.0
O A:HOH422 3.6 34.9 1.0
O A:HOH303 4.1 27.2 1.0
CG A:ASN83 4.1 16.5 1.0
ND2 A:ASN83 4.5 19.5 1.0
CA A:GLY85 4.7 14.4 1.0
O A:HOH386 4.8 30.7 0.5
OG A:SER90 4.9 38.4 1.0
N A:GLY85 5.0 12.9 1.0
O A:HOH384 5.0 29.2 1.0

Caesium binding site 10 out of 15 in 7bmq

Go back to Caesium Binding Sites List in 7bmq
Caesium binding site 10 out of 15 in the Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 10 of Hewl in Cesium Chloride (1.71 M Cscl in Cryo Protectant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs214

b:46.2
occ:0.21
 O A:ASP36 3.2 20.5 1.0
O A:GLY34 3.3 18.2 1.0
C A:GLY34 4.1 19.2 1.0
C A:ASP36 4.3 23.5 1.0
CA A:GLY34 4.4 19.3 1.0
N A:TYR38 4.5 17.7 1.0
OD1 A:ASP36 4.6 33.2 1.0
CA A:TYR38 4.6 15.7 1.0
C A:ASN37 4.7 18.3 1.0
N A:ASP36 4.8 22.3 1.0
O A:ASN37 4.9 18.4 1.0
CB A:TYR38 4.9 17.2 1.0
CD1 A:TYR38 4.9 17.5 1.0
CG A:ASP36 5.0 27.6 1.0
C A:LEU35 5.0 21.7 1.0

Reference:

W.Koelmel, J.Kuper, C.Kisker. Cesium Based Phasing of Macromolecules: A General Easy to Use Approach For Solving the Phase Problem. Sci Rep V. 11 17038 2021.
ISSN: ESSN 2045-2322
PubMed: 34426585
DOI: 10.1038/S41598-021-95186-1
Page generated: Fri Nov 5 12:52:41 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy