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Caesium in PDB 7bmp: Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).

Enzymatic activity of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).

All present enzymatic activity of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).:
3.2.1.17;

Protein crystallography data

The structure of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant)., PDB code: 7bmp was solved by W.Koelmel, J.Kuper, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.48 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.952, 78.952, 36.87, 90, 90, 90
R / Rfree (%) 15.5 / 19.5

Other elements in 7bmp:

The structure of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). (pdb code 7bmp). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 7 binding sites of Caesium where determined in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant)., PDB code: 7bmp:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Caesium binding site 1 out of 7 in 7bmp

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Caesium binding site 1 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs211

b:41.0
occ:0.44
 O A:HOH415 2.9 42.1 1.0
O A:SER90 3.1 19.2 1.0
O A:HOH369 3.3 17.2 1.0
O A:HOH376 3.3 17.7 0.5
OG A:SER90 3.4 19.1 1.0
CL A:CL203 3.4 20.8 1.0
O A:HOH324 3.8 34.6 1.0
C A:SER90 3.9 19.7 1.0
O A:HOH316 3.9 32.4 1.0
N A:SER90 4.0 21.3 1.0
O A:THR87 4.2 15.9 1.0
CA A:SER90 4.4 19.2 1.0
CB A:SER90 4.5 18.2 1.0
OD1 A:ASN83 4.6 17.4 1.0
N A:ARG91 4.8 17.0 1.0
O A:HOH370 4.9 10.8 1.0
N A:GLY89 4.9 18.8 1.0
O A:HOH301 4.9 10.4 1.0
C A:GLY89 4.9 22.6 1.0
O A:HOH416 4.9 24.4 1.0

Caesium binding site 2 out of 7 in 7bmp

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Caesium binding site 2 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs212

b:64.0
occ:0.22
 ND2 A:ASN95 2.5 34.8 1.0
O A:ASN92 3.1 14.7 1.0
CL A:CL206 3.2 35.6 1.0
CG A:ASN95 3.6 29.5 1.0
C A:ASN92 4.0 17.1 1.0
OD1 A:ASN95 4.1 39.0 1.0
CB A:ASN92 4.3 17.7 1.0
CG A:ASN92 4.6 18.7 1.0
CA A:ASN92 4.6 17.6 1.0
CB A:ASN95 4.7 27.0 1.0
CA A:ASN95 4.7 21.9 1.0
ND2 A:ASN92 4.7 17.3 1.0
N A:ASN92 4.9 16.4 1.0
N A:LEU93 4.9 17.5 1.0
O A:HOH393 5.0 19.3 1.0
N A:ASN95 5.0 19.3 1.0

Caesium binding site 3 out of 7 in 7bmp

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Caesium binding site 3 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs213

b:62.6
occ:0.22
 O A:HOH305 3.2 38.1 1.0
O A:CYS94 3.3 18.8 1.0
O A:HOH418 3.5 31.1 1.0
O A:HOH380 3.6 30.3 1.0
O A:ASN95 3.7 16.1 1.0
CG2 A:ILE96 4.2 21.9 1.0
O A:HOH361 4.3 22.4 1.0
C A:ASN95 4.4 19.1 1.0
C A:CYS94 4.5 19.1 1.0
CB A:ASN95 4.5 27.0 1.0
NZ A:LYS115 4.8 24.5 0.5
CA A:ASN95 5.0 21.9 1.0

Caesium binding site 4 out of 7 in 7bmp

Go back to Caesium Binding Sites List in 7bmp
Caesium binding site 4 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs214

b:62.8
occ:0.21
 O A:HOH314 1.8 20.8 1.0
O A:HOH420 2.9 37.6 1.0
CS A:CS217 3.1 50.1 0.2
O A:HOH409 3.2 33.2 1.0
OD2 A:ASP70 3.2 21.9 1.0
OE1 A:GLU53 3.4 14.7 1.0
OE1 A:GLN75 3.6 12.2 1.0
CG A:GLN75 4.1 12.6 1.0
CB A:GLN75 4.1 13.0 1.0
CG A:ASP70 4.2 19.2 1.0
O A:HOH307 4.2 19.6 1.0
CD A:GLN75 4.3 12.4 1.0
CB A:ASP70 4.4 14.6 1.0
O A:HOH348 4.4 14.4 1.0
CD A:GLU53 4.6 14.5 1.0
O A:HOH302 4.6 15.6 1.0
O A:HOH310 4.6 32.1 1.0
CB A:ASN62 4.7 18.9 1.0
O A:GLU53 4.9 11.3 1.0
ND2 A:ASN62 4.9 22.8 1.0

Caesium binding site 5 out of 7 in 7bmp

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Caesium binding site 5 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs215

b:51.4
occ:0.37
 OD1 A:ASN62 3.2 22.0 1.0
O A:HOH303 3.7 35.7 1.0
CG A:ASN62 4.2 24.5 1.0
ND2 A:ASN62 4.7 22.8 1.0
O A:HOH420 4.9 37.6 1.0

Caesium binding site 6 out of 7 in 7bmp

Go back to Caesium Binding Sites List in 7bmp
Caesium binding site 6 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs216

b:52.1
occ:0.23
 O A:HOH303 2.7 35.7 1.0
O A:HOH363 2.8 45.8 1.0
O A:ARG63 3.1 19.1 1.0
O A:HOH364 3.6 26.6 1.0
C A:ARG63 4.3 17.7 1.0
N A:ARG63 4.5 16.4 1.0
CA A:ARG63 4.8 18.5 1.0
CB A:ARG63 4.9 21.4 1.0

Caesium binding site 7 out of 7 in 7bmp

Go back to Caesium Binding Sites List in 7bmp
Caesium binding site 7 out of 7 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant).


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 7 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer and Cryo Protectant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs217

b:50.1
occ:0.19
 OD1 A:ASN64 2.7 23.8 1.0
O A:HOH363 2.9 45.8 1.0
OD2 A:ASP70 3.0 21.9 1.0
CS A:CS214 3.1 62.8 0.2
CB A:ASN62 3.8 18.9 1.0
CG A:ASN64 3.8 22.9 1.0
CG A:ASP70 3.9 19.2 1.0
O A:ASN62 4.1 14.4 1.0
O A:HOH310 4.1 32.1 1.0
O A:HOH314 4.2 20.8 1.0
O A:ARG63 4.4 19.1 1.0
C A:ASN62 4.4 16.9 1.0
CB A:ASP70 4.5 14.6 1.0
ND2 A:ASN64 4.5 17.8 1.0
C A:ARG63 4.6 17.7 1.0
OD1 A:ASP70 4.7 18.6 1.0
CA A:ASN62 4.7 16.1 1.0
O A:HOH420 4.8 37.6 1.0
CA A:ASN64 4.8 20.9 1.0
N A:ASN64 4.8 17.6 1.0
OE1 A:GLN75 4.9 12.2 1.0
CG A:ASN62 4.9 24.5 1.0
CB A:ASN64 4.9 22.8 1.0

Reference:

W.Koelmel, J.Kuper, C.Kisker. Cesium Based Phasing of Macromolecules: A General Easy to Use Approach For Solving the Phase Problem. Sci Rep V. 11 17038 2021.
ISSN: ESSN 2045-2322
PubMed: 34426585
DOI: 10.1038/S41598-021-95186-1
Page generated: Tue Jul 30 21:04:08 2024

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