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Caesium in PDB 7abm: X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf)

Protein crystallography data

The structure of X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf), PDB code: 7abm was solved by S.Zinn-Justin, A.Marcelot, M.H.Le Du, V.Ropars, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.16 / 3.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.32, 70.32, 40.625, 90, 90, 120
R / Rfree (%) 19.6 / 32.6

Caesium Binding Sites:

The binding sites of Caesium atom in the X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf) (pdb code 7abm). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 2 binding sites of Caesium where determined in the X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf), PDB code: 7abm:
Jump to Caesium binding site number: 1; 2;

Caesium binding site 1 out of 2 in 7abm

Go back to Caesium Binding Sites List in 7abm
Caesium binding site 1 out of 2 in the X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs101

b:140.4
occ:1.00
O A:ARG37 3.0 45.2 1.0
CE1 A:PHE39 3.7 38.0 1.0
O A:GLY38 4.1 40.3 1.0
CA A:GLY38 4.1 41.5 1.0
CD1 A:PHE39 4.1 37.5 1.0
C A:ARG37 4.1 44.7 1.0
CZ A:PHE39 4.2 37.6 1.0
C A:GLY38 4.2 40.1 1.0
N A:GLY38 4.6 42.6 1.0
N A:PHE39 5.0 38.6 1.0
CG A:PHE39 5.0 37.0 1.0
CE2 A:PHE39 5.0 37.8 1.0

Caesium binding site 2 out of 2 in 7abm

Go back to Caesium Binding Sites List in 7abm
Caesium binding site 2 out of 2 in the X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of X-Ray Structure of Phosphorylated Barrier-to-Autointegration Factor (Baf) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs102

b:216.4
occ:1.00
O A:ALA87 3.4 93.5 1.0
C A:ALA87 4.0 93.3 1.0
O A:ASP86 4.2 92.4 1.0
CA A:ALA87 4.4 92.6 1.0
O A:HOH203 4.4 46.4 1.0
C A:ASP86 4.8 92.1 1.0
N A:ALA87 4.9 92.0 1.0
N A:PHE88 4.9 93.5 1.0

Reference:

A.Marcelot, A.Petitalot, V.Ropars, M.H.Le Du, C.Samson, S.Dubois, G.Hoffmann, S.Miron, P.Cuniasse, J.A.Marquez, R.Thai, F.X.Theillet, S.Zinn-Justin. Di-Phosphorylated Baf Shows Altered Structural Dynamics and Binding to Dna, But Interacts with Its Nuclear Envelope Partners. Nucleic Acids Res. V. 49 3841 2021.
ISSN: ESSN 1362-4962
PubMed: 33744941
DOI: 10.1093/NAR/GKAB184
Page generated: Tue Jul 30 21:03:43 2024

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