Atomistry » Caesium » PDB 6dzo-7kjb » 6ub9
Atomistry »
  Caesium »
    PDB 6dzo-7kjb »
      6ub9 »

Caesium in PDB 6ub9: Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form

Enzymatic activity of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form

All present enzymatic activity of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form:
4.2.1.20;

Protein crystallography data

The structure of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form, PDB code: 6ub9 was solved by C.Chang, K.Michalska, N.I.Maltseva, R.Jedrzejczak, P.Mccarren, P.P.Nag, A.Joachimiak, K.Satchell, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.89 / 2.78
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 135.373, 159.619, 164.932, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 21

Other elements in 6ub9:

The structure of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Chlorine (Cl) 4 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form (pdb code 6ub9). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 4 binding sites of Caesium where determined in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form, PDB code: 6ub9:
Jump to Caesium binding site number: 1; 2; 3; 4;

Caesium binding site 1 out of 4 in 6ub9

Go back to Caesium Binding Sites List in 6ub9
Caesium binding site 1 out of 4 in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs503

b:0.8
occ:1.00
O B:GLY322 3.2 33.1 1.0
OG1 B:THR284 3.2 33.5 1.0
O B:TYR320 3.2 39.7 1.0
O B:GLY246 3.4 37.5 1.0
O B:ALA282 3.5 33.5 1.0
O B:HOH616 3.5 31.9 1.0
O B:VAL245 3.8 27.6 1.0
CB B:THR284 3.9 32.5 1.0
C B:GLY246 4.1 33.8 1.0
CA B:GLY246 4.1 29.8 1.0
C B:GLY322 4.3 30.7 1.0
C B:TYR320 4.4 37.0 1.0
N B:THR284 4.5 32.5 1.0
O B:LEU318 4.6 30.9 1.0
C B:VAL245 4.6 29.0 1.0
C B:ALA282 4.7 35.1 1.0
OE1 B:GLU270 4.7 37.9 1.0
CB B:GLU270 4.7 32.4 1.0
CB B:VAL323 4.8 25.2 1.0
N B:GLY322 4.8 32.1 1.0
CB B:ALA282 4.8 32.7 1.0
N B:GLY246 4.9 30.5 1.0
CA B:THR284 4.9 33.2 1.0
CB B:TYR320 4.9 36.8 1.0
CG2 B:THR284 5.0 33.3 1.0

Caesium binding site 2 out of 4 in 6ub9

Go back to Caesium Binding Sites List in 6ub9
Caesium binding site 2 out of 4 in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs503

b:47.6
occ:0.50
OG1 D:THR284 3.0 36.2 1.0
O D:TYR320 3.0 36.8 1.0
O D:HOH613 3.0 35.3 1.0
O D:GLY322 3.1 31.3 1.0
O D:GLY246 3.1 35.6 1.0
O D:HOH628 3.2 45.5 1.0
O D:ALA282 3.3 28.1 1.0
CB D:THR284 3.9 35.9 1.0
O D:VAL245 3.9 30.2 1.0
C D:GLY246 4.0 32.8 1.0
C D:TYR320 4.2 33.0 1.0
CA D:GLY246 4.2 29.9 1.0
C D:GLY322 4.3 30.6 1.0
O D:LEU318 4.4 30.1 1.0
N D:THR284 4.4 33.0 1.0
C D:ALA282 4.5 29.3 1.0
C D:VAL245 4.7 29.4 1.0
CB D:ALA282 4.7 24.3 1.0
CA D:THR284 4.8 35.1 1.0
CB D:VAL323 4.8 24.7 1.0
CB D:TYR320 4.8 30.3 1.0
N D:GLY322 4.8 32.5 1.0
C D:PRO321 4.9 33.8 1.0
CD2 D:TYR320 4.9 29.9 1.0
OE1 D:GLU270 4.9 43.3 1.0
CA D:TYR320 4.9 32.5 1.0
CG2 D:THR284 4.9 36.5 1.0
CB D:GLU270 5.0 32.6 1.0
N D:GLY246 5.0 29.6 1.0

Caesium binding site 3 out of 4 in 6ub9

Go back to Caesium Binding Sites List in 6ub9
Caesium binding site 3 out of 4 in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cs503

b:0.3
occ:1.00
OG1 F:THR284 3.1 27.3 1.0
O F:TYR320 3.2 36.8 1.0
O F:GLY322 3.2 30.5 1.0
O F:GLY246 3.3 33.6 1.0
O F:ALA282 3.4 32.1 1.0
O F:HOH615 3.5 46.6 1.0
O F:VAL245 3.8 30.2 1.0
CB F:THR284 3.8 32.8 1.0
C F:GLY246 4.1 34.1 1.0
CA F:GLY246 4.2 35.4 1.0
N F:THR284 4.3 34.1 1.0
C F:TYR320 4.4 34.5 1.0
C F:GLY322 4.4 29.2 1.0
O F:LEU318 4.5 38.9 1.0
C F:ALA282 4.5 34.6 1.0
C F:VAL245 4.6 30.7 1.0
CA F:THR284 4.7 33.9 1.0
OE1 F:GLU270 4.8 48.2 1.0
CB F:GLU270 4.8 38.0 1.0
CB F:VAL323 4.9 28.0 1.0
CB F:ALA282 4.9 33.6 1.0
N F:GLY322 4.9 27.3 1.0
CG2 F:THR284 4.9 28.1 1.0
N F:GLY246 4.9 34.6 1.0
CD2 F:TYR320 5.0 33.0 1.0

Caesium binding site 4 out of 4 in 6ub9

Go back to Caesium Binding Sites List in 6ub9
Caesium binding site 4 out of 4 in the Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cs504

b:72.6
occ:0.65
OG1 H:THR284 2.9 26.8 1.0
O H:GLY246 3.2 31.0 1.0
O H:GLY322 3.2 29.7 1.0
O H:TYR320 3.2 35.9 1.0
O H:HOH628 3.3 35.4 1.0
O H:ALA282 3.4 32.7 1.0
CB H:THR284 3.6 29.0 1.0
O H:VAL245 3.8 26.7 1.0
C H:GLY246 4.1 30.9 1.0
C H:GLY322 4.3 28.8 1.0
C H:TYR320 4.3 34.6 1.0
N H:THR284 4.3 29.9 1.0
CA H:GLY246 4.4 28.1 1.0
O H:LEU318 4.6 27.2 1.0
C H:ALA282 4.6 31.0 1.0
CA H:THR284 4.7 29.6 1.0
CG2 H:THR284 4.7 28.1 1.0
OE1 H:GLU270 4.7 36.3 1.0
CB H:GLU270 4.7 30.5 1.0
C H:VAL245 4.8 25.9 1.0
CB H:VAL323 4.8 22.3 1.0
N H:GLY322 4.9 31.2 1.0
CG2 H:VAL323 4.9 21.8 1.0
CB H:ALA282 4.9 24.5 1.0
CB H:TYR320 4.9 30.3 1.0
C H:PRO321 5.0 33.4 1.0
CD2 H:TYR320 5.0 28.7 1.0

Reference:

C.Chang, K.Michalska, N.I.Maltseva, R.Jedrzejczak, P.Mccarren, P.P.Nag, A.Joachimiak, K.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and BRD6309-Bound Form To Be Published.
Page generated: Sun Dec 13 10:57:21 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy