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Caesium in PDB 6od9: Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser

Protein crystallography data

The structure of Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser, PDB code: 6od9 was solved by C.P.Jones, B.Tran, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.19 / 4.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.740, 92.740, 120.480, 90.00, 90.00, 120.00
R / Rfree (%) 25.8 / 30.8

Other elements in 6od9:

The structure of Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 5 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser (pdb code 6od9). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 2 binding sites of Caesium where determined in the Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser, PDB code: 6od9:
Jump to Caesium binding site number: 1; 2;

Caesium binding site 1 out of 2 in 6od9

Go back to Caesium Binding Sites List in 6od9
Caesium binding site 1 out of 2 in the Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs105

b:0.5
occ:1.00
N7 A:G25 3.2 74.1 1.0
O6 A:G25 3.7 83.9 1.0
OP2 A:G17 4.0 63.1 1.0
C5 A:G25 4.1 86.1 1.0
C8 A:G25 4.2 71.3 1.0
C6 A:G25 4.3 80.8 1.0
OP2 A:A18 4.5 29.7 1.0
OP2 A:G25 4.6 95.7 1.0
OP1 A:G17 4.7 40.1 1.0
P A:G17 4.8 41.7 1.0

Caesium binding site 2 out of 2 in 6od9

Go back to Caesium Binding Sites List in 6od9
Caesium binding site 2 out of 2 in the Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs106

b:81.0
occ:1.00
N7 B:G25 3.3 38.9 1.0
O6 B:G25 4.1 42.6 1.0
OP2 B:G25 4.1 47.1 1.0
C8 B:G25 4.2 35.6 1.0
C5 B:G25 4.3 45.9 1.0
OP2 B:G17 4.5 29.6 1.0
C6 B:G25 4.6 46.5 1.0
OP2 B:A18 4.7 22.1 1.0
OP1 B:G17 4.9 32.6 1.0

Reference:

C.Jones, B.Tran, C.Conrad, J.Stagno, R.Trachman 3Rd, P.Fischer, A.Meents, A.Ferre-D'amare. Co-Crystal Structure of the Fusobacterium Ulcerans Ztp Riboswitch Using An X-Ray Free-Electron Laser. Acta Crystallogr.,Sect.F V. 75 496 2019.
ISSN: ESSN 2053-230X
PubMed: 31282869
DOI: 10.1107/S2053230X19008549
Page generated: Sun Dec 13 10:57:14 2020

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