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Caesium in PDB 6grd: Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium

Protein crystallography data

The structure of Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium, PDB code: 6grd was solved by D.M.J.Lilley, Y.Liu, D.J.Freeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.81 / 2.66
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.390, 97.390, 119.000, 90.00, 90.00, 120.00
R / Rfree (%) 24.4 / 26.2

Other elements in 6grd:

The structure of Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Caesium Binding Sites:

The binding sites of Caesium atom in the Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium (pdb code 6grd). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total only one binding site of Caesium was determined in the Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium, PDB code: 6grd:

Caesium binding site 1 out of 1 in 6grd

Go back to Caesium Binding Sites List in 6grd
Caesium binding site 1 out of 1 in the Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Eukaryotic Junction-Resolving Enzyme Gen-1 Binding with Cesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs601

b:85.9
occ:0.00
O A:ASP203 3.0 94.2 1.0
O A:CYS208 3.1 80.1 1.0
OP1 R:DC9 3.2 87.8 1.0
OP2 R:DC9 3.2 84.4 1.0
O A:SER196 3.4 82.3 1.0
O A:ILE205 3.4 87.5 1.0
P R:DC9 3.6 86.9 1.0
O A:MSE195 3.7 84.9 0.0
C A:SER196 3.9 82.9 1.0
CA A:SER196 3.9 83.6 1.0
C A:CYS208 4.0 80.9 1.0
C A:ASP203 4.1 95.0 1.0
N A:CYS208 4.3 84.6 1.0
C A:ILE205 4.3 88.5 1.0
N A:GLY207 4.4 84.3 1.0
C A:MSE195 4.6 84.0 0.0
CA A:PRO206 4.6 87.5 1.0
O3' R:DA8 4.6 85.6 1.0
N A:SER196 4.7 84.9 1.0
CA A:CYS208 4.7 83.4 1.0
N A:GLY209 4.8 80.9 1.0
N A:ILE205 4.8 87.4 1.0
CA A:GLY209 4.8 78.6 1.0
N A:GLY197 4.9 86.7 1.0
CA A:ASP203 4.9 94.6 1.0
N A:PRO206 4.9 87.7 1.0
C A:GLY204 4.9 93.2 1.0
C A:PRO206 4.9 87.6 1.0
O5' R:DC9 4.9 87.0 1.0
CB A:SER196 5.0 81.3 1.0

Reference:

Y.Liu, A.D.Freeman, A.C.Declais, D.M.J.Lilley. A Monovalent Ion in the Dna Binding Interface of the Eukaryotic Junction-Resolving Enzyme GEN1. Nucleic Acids Res. V. 46 11089 2018.
ISSN: ESSN 1362-4962
PubMed: 30247722
DOI: 10.1093/NAR/GKY863
Page generated: Sun Dec 13 10:57:07 2020

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