Atomistry » Caesium » PDB 2ov4-4ht3 » 4eeb
Atomistry »
  Caesium »
    PDB 2ov4-4ht3 »
      4eeb »

Caesium in PDB 4eeb: Cora Coiled-Coil Mutant Under MG2+ Absence

Protein crystallography data

The structure of Cora Coiled-Coil Mutant Under MG2+ Absence, PDB code: 4eeb was solved by R.Pfoh, E.F.Pai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 3.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 125.600, 221.900, 106.800, 90.00, 90.00, 90.00
R / Rfree (%) 29.9 / 34.3

Other elements in 4eeb:

The structure of Cora Coiled-Coil Mutant Under MG2+ Absence also contains other interesting chemical elements:

Sodium (Na) 1 atom

Caesium Binding Sites:

The binding sites of Caesium atom in the Cora Coiled-Coil Mutant Under MG2+ Absence (pdb code 4eeb). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 9 binding sites of Caesium where determined in the Cora Coiled-Coil Mutant Under MG2+ Absence, PDB code: 4eeb:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Caesium binding site 1 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 1 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs401

b:0.3
occ:0.80
 ND2 A:ASN314 3.0 0.9 1.0
ND2 E:ASN314 3.7 0.7 1.0
OD1 E:ASN314 3.7 0.5 1.0
OD1 A:ASN314 3.8 0.9 1.0
CG A:ASN314 3.9 1.0 1.0
ND2 D:ASN314 4.0 0.1 1.0
CG E:ASN314 4.1 0.7 1.0
O E:GLY312 4.2 0.5 1.0
OD1 C:ASN314 4.2 0.7 1.0
O A:GLY312 4.3 0.7 1.0
ND2 C:ASN314 4.3 0.1 1.0
OD1 D:ASN314 4.4 0.2 1.0
O D:GLY312 4.5 0.4 1.0
C A:GLY312 4.6 0.1 1.0
CG C:ASN314 4.7 0.8 1.0
CG D:ASN314 4.7 0.1 1.0
CA A:GLY312 4.7 0.1 1.0
C E:GLY312 4.9 0.5 1.0

Caesium binding site 2 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 2 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1001

b:0.7
occ:0.50
 OD1 C:ASP89 3.0 0.9 1.0
CE1 B:HIS257 3.2 0.6 1.0
NE2 B:HIS257 3.5 0.1 1.0
OE1 C:GLN95 3.7 0.9 1.0
ND1 B:HIS257 3.9 0.3 1.0
CG C:ASP89 4.2 0.4 1.0
OE2 C:GLU88 4.3 0.9 1.0
ND2 C:ASN92 4.4 0.1 1.0
CD2 B:HIS257 4.4 0.1 1.0
CG C:ASN92 4.4 0.2 1.0
CB C:ASN92 4.5 0.7 1.0
OD2 B:ASP253 4.6 0.9 1.0
OD1 B:ASP253 4.6 0.3 1.0
CG B:HIS257 4.6 0.3 1.0
CA C:ASP89 4.7 0.8 1.0
CD C:GLN95 4.7 0.2 1.0
OD1 C:ASN92 4.9 0.7 1.0
CG B:ASP253 5.0 0.8 1.0

Caesium binding site 3 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 3 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1003

b:0.9
occ:0.50
 OD2 B:ASP189 3.5 0.1 1.0
OE1 B:GLU186 3.8 0.2 1.0
CG B:ASP189 4.2 0.2 1.0
CG B:GLU186 4.3 0.0 1.0
CA B:GLU186 4.3 0.9 1.0
CB B:ASP189 4.3 0.7 1.0
CD B:GLU186 4.5 0.7 1.0
CB B:GLU186 4.6 0.1 1.0
N B:GLU186 4.8 0.9 1.0
O B:LEU185 5.0 0.2 1.0

Caesium binding site 4 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 4 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1004

b:0.5
occ:0.50
 OD1 B:ASP190 3.1 0.7 1.0
OD2 B:ASP190 3.5 0.9 1.0
CG B:ASP190 3.5 0.2 1.0
CB B:ASP190 4.8 0.3 1.0

Caesium binding site 5 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 5 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs401

b:0.1
occ:0.50
 OD2 C:ASP253 2.8 0.6 1.0
CG C:ASP253 3.6 0.7 1.0
OH C:TYR171 3.8 0.5 1.0
OD1 C:ASP253 3.9 0.3 1.0
CD2 D:LEU85 4.1 0.0 1.0
CB C:ASP253 4.7 0.5 1.0

Caesium binding site 6 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 6 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs1001

b:0.0
occ:0.50
 ND2 E:ASN92 3.1 0.1 1.0
CE1 D:HIS257 3.3 0.7 1.0
CD E:GLN95 3.8 0.7 1.0
OE1 E:GLN95 3.8 0.0 1.0
NE2 E:GLN95 4.0 0.9 1.0
CG E:ASN92 4.0 0.7 1.0
ND1 D:HIS257 4.1 0.2 1.0
CB E:ASN92 4.1 0.1 1.0
NE2 D:HIS257 4.2 0.8 1.0
OD1 E:ASP89 4.3 0.7 1.0
CG E:GLN95 4.4 0.4 1.0
OE2 E:GLU88 4.5 0.6 1.0
OD1 D:ASP253 4.7 0.1 1.0
CA E:ASP89 4.8 0.0 1.0
CG E:ASP89 4.8 0.3 1.0

Caesium binding site 7 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 7 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 7 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs401

b:0.5
occ:0.50
 NE2 E:GLN213 4.7 0.5 1.0
OE1 E:GLU121 4.9 0.8 1.0

Caesium binding site 8 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 8 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 8 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs402

b:0.2
occ:0.50
 OD1 A:ASP89 2.7 0.8 1.0
OD1 E:ASP253 2.8 0.2 1.0
OD2 E:ASP253 3.0 0.5 1.0
CG E:ASP253 3.2 0.6 1.0
CG A:ASP89 3.4 0.2 1.0
OE2 A:GLU88 3.5 0.3 1.0
OD2 A:ASP89 3.5 0.2 1.0
O A:LEU85 3.6 0.6 1.0
NE2 E:HIS257 3.9 0.7 1.0
CD2 A:LEU85 4.0 0.1 1.0
CE1 E:HIS257 4.1 0.6 1.0
C A:LEU85 4.5 0.1 1.0
CB E:ASP253 4.5 0.1 1.0
CD A:GLU88 4.5 0.5 1.0
CB A:ASP89 4.6 0.8 1.0
CB A:GLU88 4.6 0.2 1.0
CA A:LEU85 4.6 0.9 1.0
N A:ASP89 4.7 0.1 1.0
CB A:LEU85 4.7 0.7 1.0
CG A:GLU88 4.8 0.9 1.0
CA A:ASP89 4.9 0.4 1.0
CG A:LEU85 5.0 0.1 1.0

Caesium binding site 9 out of 9 in 4eeb

Go back to Caesium Binding Sites List in 4eeb
Caesium binding site 9 out of 9 in the Cora Coiled-Coil Mutant Under MG2+ Absence


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 9 of Cora Coiled-Coil Mutant Under MG2+ Absence within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs403

b:0.4
occ:0.50
 OD2 E:ASP193 4.6 0.9 1.0
OE2 A:GLU121 4.9 0.9 1.0
OD1 E:ASP193 4.9 0.1 1.0

Reference:

R.Pfoh, A.Li, N.Chakrabarti, J.Payandeh, R.Pomes, E.F.Pai. Structural Asymmetry in the Magnesium Channel Cora Points to Sequential Allosteric Regulation. Proc.Natl.Acad.Sci.Usa V. 109 18809 2012.
ISSN: ISSN 0027-8424
PubMed: 23112165
DOI: 10.1073/PNAS.1209018109
Page generated: Tue Jul 30 20:27:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy