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Caesium in PDB 3c35: Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution, PDB code: 3c35 was solved by M.L.Mayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.27 / 1.97
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 70.587, 70.587, 234.359, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.7

Other elements in 3c35:

The structure of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Caesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Caesium atom in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution (pdb code 3c35). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 13 binding sites of Caesium where determined in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution, PDB code: 3c35:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Caesium binding site 1 out of 13 in 3c35

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Caesium binding site 1 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs301

b:40.6
occ:0.50
 OD1 A:ASP100 2.7 22.8 1.0
O A:GLU96 2.8 15.5 1.0
OE1 A:GLU96 3.2 28.9 1.0
O A:ILE99 3.3 13.4 1.0
O B:HOH425 3.3 29.9 1.0
O A:HOH554 3.5 34.5 1.0
CG A:ASP100 3.9 20.2 1.0
O A:HOH600 3.9 47.3 1.0
C A:GLU96 4.0 14.9 1.0
CD A:GLU96 4.1 24.7 1.0
C A:ILE99 4.1 13.1 1.0
CA A:ASP100 4.2 15.6 1.0
CG A:GLU96 4.3 21.8 1.0
CG1 A:ILE222 4.3 16.5 1.0
N A:ASP100 4.6 13.6 1.0
CG B:ASP228 4.6 22.7 1.0
OD2 B:ASP228 4.6 22.3 1.0
CA A:GLU96 4.6 14.9 1.0
CB A:ASP100 4.7 16.3 1.0
CD1 A:ILE222 4.7 20.4 1.0
CD1 B:ILE232 4.7 19.0 1.0
OD2 A:ASP100 4.8 25.4 1.0
CB B:ASP228 4.8 20.8 1.0
OD1 B:ASP228 4.9 28.6 1.0

Caesium binding site 2 out of 13 in 3c35

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Caesium binding site 2 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs303

b:33.9
occ:0.55
 O A:SER22 2.8 25.8 1.0
O A:HOH407 3.1 28.8 1.0
O A:HOH424 4.0 31.1 1.0
C A:SER22 4.0 25.8 1.0
C A:ASP23 4.3 23.9 1.0
O A:ASP23 4.3 24.4 1.0
O A:LYS24 4.5 19.2 1.0
CA A:ASP23 4.6 25.1 1.0
N A:LYS24 4.6 22.0 1.0
N A:ASP23 4.8 25.0 1.0
C A:LYS24 4.9 19.1 1.0
N A:SER22 5.0 25.2 1.0

Caesium binding site 3 out of 13 in 3c35

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Caesium binding site 3 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs304

b:37.0
occ:0.55
 O A:PHE49 3.2 15.3 1.0
OG A:SER44 3.3 19.2 1.0
OD1 A:ASN45 3.4 25.9 1.0
O A:SER44 3.5 18.6 1.0
C A:SER44 3.9 17.4 1.0
CB A:SER44 3.9 16.8 1.0
C A:PHE49 4.2 15.5 1.0
N A:ASN45 4.4 17.7 1.0
CD2 A:LEU50 4.4 18.6 1.0
CA A:SER44 4.5 17.3 1.0
N A:PHE49 4.5 15.4 1.0
CA A:ASN45 4.6 18.4 1.0
CG A:ASN45 4.6 22.1 1.0
N A:LEU50 4.9 15.1 1.0

Caesium binding site 4 out of 13 in 3c35

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Caesium binding site 4 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs305

b:51.8
occ:0.60
 O A:LYS150 3.0 19.8 1.0
OE1 A:GLU155 3.3 24.5 1.0
O A:HOH523 3.6 48.5 1.0
N A:SER152 4.0 20.2 1.0
CD A:GLU155 4.1 22.9 1.0
C A:LYS150 4.2 19.7 1.0
O A:HOH448 4.2 38.5 1.0
CA A:SER152 4.2 21.0 1.0
CB A:SER152 4.3 22.0 1.0
OE2 A:GLU155 4.3 23.5 1.0
C A:ILE151 4.6 19.5 1.0
CA A:ILE151 4.9 19.7 1.0

Caesium binding site 5 out of 13 in 3c35

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Caesium binding site 5 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs306

b:39.3
occ:0.65
 O A:LEU181 2.9 14.7 1.0
O A:HOH565 3.1 26.4 1.0
C A:LEU181 4.1 16.3 1.0
CA A:THR182 4.7 16.7 1.0
N A:THR182 4.9 16.0 1.0

Caesium binding site 6 out of 13 in 3c35

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Caesium binding site 6 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs309

b:42.8
occ:0.50
 O A:ILE120 2.8 18.1 1.0
O A:THR118 3.3 18.1 1.0
C A:ILE120 3.8 18.8 1.0
OD1 A:ASP121 3.9 33.2 1.0
O A:HOH494 3.9 33.4 1.0
N A:ILE120 4.3 18.3 1.0
CA A:ASP121 4.3 22.1 1.0
N A:ASP121 4.4 19.8 1.0
C A:THR118 4.5 17.9 1.0
C A:PRO119 4.5 18.4 1.0
CB A:ASP121 4.6 24.1 1.0
CG A:ASP121 4.6 30.1 1.0
CA A:ILE120 4.7 18.5 1.0
CD1 A:ILE207 4.7 22.4 1.0
OG1 A:THR118 4.9 18.6 1.0
O A:PRO119 4.9 18.2 1.0
O A:HOH498 5.0 38.0 1.0
CA A:PRO119 5.0 18.4 1.0

Caesium binding site 7 out of 13 in 3c35

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Caesium binding site 7 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 7 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs302

b:29.9
occ:0.70
 OD1 B:ASP100 2.8 22.9 1.0
O B:GLU96 2.9 15.7 1.0
O B:ILE99 3.2 14.6 1.0
OE1 B:GLU96 3.3 32.1 1.0
CG B:ASP100 4.0 21.0 1.0
C B:ILE99 4.1 13.9 1.0
C B:GLU96 4.2 14.7 1.0
CD B:GLU96 4.3 26.0 1.0
CA B:ASP100 4.3 17.0 1.0
CG1 B:ILE222 4.3 15.6 1.0
CG B:GLU96 4.4 19.8 1.0
OD2 A:ASP228 4.5 24.8 1.0
N B:ASP100 4.6 15.1 1.0
CG A:ASP228 4.6 21.3 1.0
CD1 B:ILE222 4.7 17.9 1.0
CB B:ASP100 4.8 17.6 1.0
CD1 A:ILE232 4.8 20.8 1.0
OD2 B:ASP100 4.9 23.0 1.0
OD1 A:ASP228 4.9 25.7 1.0
O B:LYS97 4.9 15.8 1.0
CA B:GLU96 4.9 15.3 1.0
C B:LYS97 4.9 14.6 1.0
CB A:ASP228 5.0 17.8 1.0

Caesium binding site 8 out of 13 in 3c35

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Caesium binding site 8 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 8 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs307

b:36.7
occ:0.50
 O B:HOH544 2.8 40.0 1.0
O B:ILE120 2.9 21.2 1.0
O B:THR118 3.1 19.9 1.0
OD1 B:ASP121 3.6 33.2 1.0
C B:ILE120 3.9 21.7 1.0
O B:HOH406 4.0 23.4 1.0
C B:THR118 4.2 20.7 1.0
N B:ILE120 4.4 22.0 1.0
C B:PRO119 4.4 23.2 1.0
CG B:ASP121 4.4 28.3 1.0
CD1 B:ILE207 4.5 15.2 1.0
CA B:ASP121 4.5 21.8 1.0
O B:HOH481 4.6 29.1 1.0
O B:HOH522 4.6 36.9 1.0
O B:PRO119 4.7 24.1 1.0
N B:ASP121 4.7 21.1 1.0
OG1 B:THR118 4.7 19.3 1.0
CA B:PRO119 4.8 22.6 1.0
CA B:ILE120 4.8 21.7 1.0
CB B:ASP121 4.9 23.1 1.0

Caesium binding site 9 out of 13 in 3c35

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Caesium binding site 9 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 9 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs308

b:37.4
occ:0.50
 O B:PHE49 3.2 16.3 1.0
OG B:SER44 3.3 22.2 1.0
O B:SER44 3.5 20.8 1.0
OD1 B:ASN45 3.5 28.7 1.0
C B:SER44 3.8 20.7 1.0
CB B:SER44 3.9 20.2 1.0
C B:PHE49 4.3 17.1 1.0
N B:ASN45 4.3 21.5 1.0
CA B:ASN45 4.5 21.7 1.0
CA B:SER44 4.5 20.0 1.0
CD2 B:LEU50 4.6 20.0 1.0
N B:PHE49 4.6 18.1 1.0
CG B:ASN45 4.7 26.4 1.0
O B:HOH569 5.0 37.5 1.0

Caesium binding site 10 out of 13 in 3c35

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Caesium binding site 10 out of 13 in the Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 10 of Crystal Structure of GLUR5 Ligand-Binding Core in Complex with Cesium at 1.97 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs310

b:54.4
occ:0.40
 O B:LYS150 2.8 20.5 1.0
OE1 B:GLU155 3.6 26.6 1.0
OE2 B:GLU155 3.9 25.9 1.0
C B:LYS150 4.0 22.4 1.0
CD B:GLU155 4.1 24.7 1.0
N B:SER152 4.2 22.7 1.0
CA B:SER152 4.4 23.2 1.0
CB B:SER152 4.6 24.2 1.0
C B:ILE151 4.6 22.1 1.0
CA B:LYS150 4.9 22.4 1.0
CA B:ILE151 4.9 21.9 1.0
N B:ILE151 4.9 21.6 1.0
CB B:LYS150 5.0 22.8 1.0

Reference:

A.J.Plested, R.Vijayan, P.C.Biggin, M.L.Mayer. Molecular Basis of Kainate Receptor Modulation By Sodium. Neuron V. 58 720 2008.
ISSN: ISSN 0896-6273
PubMed: 18549784
DOI: 10.1016/J.NEURON.2008.04.001
Page generated: Sun Dec 13 10:55:58 2020

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