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Caesium in PDB 9bzc: Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs

Protein crystallography data

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc was solved by C.P.Jones, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.86 / 2.52
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.864, 47.673, 74.11, 90, 129.26, 90
R / Rfree (%) 19.5 / 22.6

Other elements in 9bzc:

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 7 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs (pdb code 9bzc). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 2 binding sites of Caesium where determined in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc:
Jump to Caesium binding site number: 1; 2;

Caesium binding site 1 out of 2 in 9bzc

Go back to Caesium Binding Sites List in 9bzc
Caesium binding site 1 out of 2 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs101

b:106.8
occ:1.00
O4 A:U28 3.0 76.3 1.0
OP1 A:G26 3.7 84.2 1.0
C4 A:U28 4.0 82.4 1.0
C5' A:G26 4.2 86.9 1.0
O3' A:G26 4.4 89.1 1.0
C5 A:U28 4.6 86.7 1.0
OP1 A:U27 4.9 88.8 1.0
O5' A:G26 4.9 86.1 1.0
P A:G26 5.0 85.7 1.0
C4' A:G26 5.0 91.3 1.0

Caesium binding site 2 out of 2 in 9bzc

Go back to Caesium Binding Sites List in 9bzc
Caesium binding site 2 out of 2 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs102

b:59.9
occ:0.10
O2' A:G78 3.1 72.1 1.0
OP1 A:A79 3.4 73.4 1.0
O2 A:AMZ105 3.4 61.1 1.0
OP2 A:A79 3.6 65.0 1.0
C3 A:AMZ105 3.6 59.7 1.0
O1 A:AMZ105 3.6 66.6 1.0
K A:K106 3.9 67.5 1.0
P A:A79 3.9 76.6 1.0
C2 A:AMZ105 4.0 64.0 1.0
C2' A:G78 4.3 67.8 1.0
O3' A:G78 4.8 70.4 1.0
C3' A:G78 4.9 66.5 1.0

Reference:

C.P.Jones, B.Tran, A.R.Ferre-D'amare. Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs To Be Published.
Page generated: Tue Dec 10 19:35:45 2024

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