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Caesium in PDB 8hrq: Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad

Enzymatic activity of Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad

All present enzymatic activity of Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad:
1.2.1.12;

Protein crystallography data

The structure of Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad, PDB code: 8hrq was solved by H.F.Son, K.J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.71 / 2.09
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.71, 117.891, 77.128, 90, 116.92, 90
R / Rfree (%) 17.7 / 24.6

Caesium Binding Sites:

The binding sites of Caesium atom in the Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad (pdb code 8hrq). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 2 binding sites of Caesium where determined in the Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad, PDB code: 8hrq:
Jump to Caesium binding site number: 1; 2;

Caesium binding site 1 out of 2 in 8hrq

Go back to Caesium Binding Sites List in 8hrq
Caesium binding site 1 out of 2 in the Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs401

b:57.7
occ:1.00
 O A:LYS37 2.9 44.7 1.0
OD1 A:ASN39 3.2 37.8 1.0
CG1 A:VAL75 3.2 40.9 1.0
O A:ASP35 3.4 49.6 1.0
O A:TYR76 3.5 51.5 1.0
CB A:ALA77 3.9 58.3 1.0
C A:LYS37 4.1 38.9 1.0
CG A:ASN39 4.2 40.1 1.0
C A:TYR76 4.2 53.9 1.0
CD1 A:LEU42 4.3 40.7 1.0
CB A:VAL75 4.5 39.7 1.0
C A:ASP35 4.5 46.7 1.0
CA A:ASP38 4.6 41.3 1.0
CA A:ALA77 4.7 56.5 1.0
ND2 A:ASN39 4.7 37.6 1.0
N A:ASN39 4.7 34.0 1.0
N A:ALA77 4.7 58.9 1.0
C A:ASP38 4.7 38.9 1.0
C A:VAL75 4.8 50.4 1.0
N A:LYS37 4.8 50.9 1.0
N A:ASP38 4.8 33.3 1.0
O A:VAL75 4.8 51.0 1.0
N A:TYR76 4.9 54.5 1.0
C A:SER36 4.9 52.2 1.0
N A:ASP35 5.0 43.8 1.0

Caesium binding site 2 out of 2 in 8hrq

Go back to Caesium Binding Sites List in 8hrq
Caesium binding site 2 out of 2 in the Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum ATCC13032 (L36S/T37K) in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs401

b:93.9
occ:1.00
 ND2 B:ASN146 3.1 39.8 1.0
O B:GLU143 3.2 49.0 1.0
O B:PRO142 3.6 45.7 1.0
O B:GLU336 3.9 57.4 1.0
C B:GLU143 4.0 50.9 1.0
CG B:ASN146 4.0 49.9 1.0
CA B:GLU143 4.1 65.9 1.0
OD1 B:ASN146 4.3 60.2 1.0
NZ B:LYS117 4.4 46.2 1.0
C B:PRO142 4.6 51.3 1.0
N B:GLU336 4.8 54.0 1.0
C B:GLU336 4.8 60.6 1.0
CB B:GLU336 4.8 52.2 1.0
CE B:LYS117 4.8 41.8 1.0
N B:GLU143 4.8 57.8 1.0

Reference:

H.F.Son, H.Yu, J.Hong, D.Lee, I.K.Kim, K.J.Kim. Structure-Guided Protein Engineering of Glyceraldehyde-3-Phosphate Dehydrogenase From Corynebacterium Glutamicum For Dual Nad/Nadp Cofactor Specificity. J.Agric.Food Chem. V. 71 17852 2023.
ISSN: ESSN 1520-5118
PubMed: 37935620
DOI: 10.1021/ACS.JAFC.3C06176
Page generated: Tue Jul 30 21:22:46 2024

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