Caesium in PDB 7k0b: The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
Enzymatic activity of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
All present enzymatic activity of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step:
4.2.1.20;
Protein crystallography data
The structure of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step, PDB code: 7k0b
was solved by
E.Hilario,
M.F.Dunn,
L.J.Mueller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.18 /
1.57
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
182.939,
58.379,
67.199,
90,
94.63,
90
|
R / Rfree (%)
|
19.9 /
23.6
|
Other elements in 7k0b:
The structure of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step also contains other interesting chemical elements:
Caesium Binding Sites:
The binding sites of Caesium atom in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
(pdb code 7k0b). This binding sites where shown within
5.0 Angstroms radius around Caesium atom.
In total 5 binding sites of Caesium where determined in the
The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step, PDB code: 7k0b:
Jump to Caesium binding site number:
1;
2;
3;
4;
5;
Caesium binding site 1 out
of 5 in 7k0b
Go back to
Caesium Binding Sites List in 7k0b
Caesium binding site 1 out
of 5 in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
 Mono view
 Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 1 of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs419
b:20.8
occ:0.60
|
CS
|
B:CS419
|
0.0
|
20.8
|
0.6
|
CS
|
B:CS419
|
1.2
|
36.5
|
0.4
|
O
|
B:THR66
|
2.9
|
23.6
|
1.0
|
O
|
B:THR71
|
3.0
|
19.7
|
1.0
|
O
|
B:THR69
|
3.1
|
23.6
|
1.0
|
O
|
B:HOH650
|
3.1
|
34.4
|
1.0
|
OG1
|
B:THR66
|
3.2
|
21.9
|
1.0
|
O
|
B:HOH749
|
3.3
|
46.9
|
1.0
|
C
|
B:THR66
|
3.7
|
23.4
|
1.0
|
CB
|
B:THR66
|
3.8
|
22.1
|
1.0
|
O
|
B:HOH840
|
3.9
|
30.6
|
1.0
|
C
|
B:THR69
|
4.0
|
23.7
|
1.0
|
C
|
B:THR71
|
4.1
|
19.2
|
1.0
|
OG1
|
B:THR69
|
4.2
|
20.9
|
1.0
|
N
|
B:ALA67
|
4.4
|
23.3
|
1.0
|
CA
|
B:THR66
|
4.4
|
22.6
|
1.0
|
N
|
B:THR69
|
4.5
|
24.8
|
1.0
|
N
|
B:THR71
|
4.5
|
19.5
|
1.0
|
CA
|
B:ALA67
|
4.5
|
25.2
|
1.0
|
O
|
B:HOH778
|
4.6
|
60.0
|
1.0
|
O
|
B:HOH595
|
4.6
|
19.2
|
1.0
|
CA
|
B:THR69
|
4.7
|
23.7
|
1.0
|
N
|
B:GLY68
|
4.7
|
26.8
|
1.0
|
N
|
B:ARG70
|
4.8
|
23.7
|
1.0
|
CA
|
B:ARG70
|
4.9
|
23.7
|
1.0
|
C
|
B:ARG70
|
4.9
|
22.0
|
1.0
|
CA
|
B:THR71
|
5.0
|
19.1
|
1.0
|
N
|
B:THR72
|
5.0
|
19.4
|
1.0
|
CG2
|
B:THR66
|
5.0
|
21.3
|
1.0
|
|
Caesium binding site 2 out
of 5 in 7k0b
Go back to
Caesium Binding Sites List in 7k0b
Caesium binding site 2 out
of 5 in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
 Mono view
 Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 2 of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs419
b:36.5
occ:0.40
|
CS
|
B:CS419
|
0.0
|
36.5
|
0.4
|
CS
|
B:CS419
|
1.2
|
20.8
|
0.6
|
O
|
B:THR71
|
3.3
|
19.7
|
1.0
|
O
|
B:THR69
|
3.4
|
23.6
|
1.0
|
O
|
B:HOH749
|
3.6
|
46.9
|
1.0
|
O
|
B:HOH650
|
3.6
|
34.4
|
1.0
|
O
|
B:HOH840
|
3.7
|
30.6
|
1.0
|
OG1
|
B:THR66
|
4.1
|
21.9
|
1.0
|
O
|
B:THR66
|
4.1
|
23.6
|
1.0
|
C
|
B:THR71
|
4.2
|
19.2
|
1.0
|
O
|
B:HOH778
|
4.4
|
60.0
|
1.0
|
OG1
|
B:THR72
|
4.4
|
20.0
|
1.0
|
C
|
B:THR69
|
4.4
|
23.7
|
1.0
|
N
|
B:THR71
|
4.7
|
19.5
|
1.0
|
CB
|
B:THR66
|
4.7
|
22.1
|
1.0
|
N
|
B:THR72
|
4.8
|
19.4
|
1.0
|
CA
|
B:ARG70
|
4.8
|
23.7
|
1.0
|
C
|
B:ARG70
|
4.8
|
22.0
|
1.0
|
CA
|
B:THR72
|
4.8
|
18.8
|
1.0
|
O
|
B:HOH595
|
4.9
|
19.2
|
1.0
|
C
|
B:THR66
|
5.0
|
23.4
|
1.0
|
|
Caesium binding site 3 out
of 5 in 7k0b
Go back to
Caesium Binding Sites List in 7k0b
Caesium binding site 3 out
of 5 in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
 Mono view
 Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 3 of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs420
b:22.2
occ:0.50
|
CS
|
B:CS420
|
0.0
|
22.2
|
0.5
|
CS
|
B:CS420
|
1.0
|
23.1
|
0.3
|
CS
|
B:CS420
|
2.8
|
46.1
|
0.2
|
OE1
|
B:GLU256
|
3.0
|
24.7
|
1.0
|
O
|
B:GLY232
|
3.0
|
20.9
|
1.0
|
O
|
B:GLY268
|
3.3
|
23.9
|
1.0
|
O
|
B:SER308
|
3.3
|
22.7
|
1.0
|
O
|
B:VAL231
|
3.4
|
19.3
|
1.0
|
C
|
B:GLY232
|
3.9
|
19.9
|
1.0
|
CD
|
B:GLU256
|
3.9
|
23.0
|
1.0
|
CG
|
B:GLU256
|
4.1
|
21.9
|
1.0
|
CB
|
B:VAL309
|
4.1
|
20.4
|
1.0
|
CG2
|
B:VAL309
|
4.1
|
20.8
|
1.0
|
CG1
|
B:VAL231
|
4.1
|
18.4
|
1.0
|
C
|
B:VAL231
|
4.2
|
18.7
|
1.0
|
CA
|
B:GLY232
|
4.2
|
19.4
|
1.0
|
C
|
B:SER308
|
4.4
|
23.3
|
1.0
|
C
|
B:GLY268
|
4.5
|
24.3
|
1.0
|
O
|
B:PHE306
|
4.5
|
29.6
|
1.0
|
CB
|
B:GLU256
|
4.6
|
21.0
|
1.0
|
CD1
|
B:LEU270
|
4.6
|
32.0
|
1.0
|
CD
|
B:PRO257
|
4.6
|
20.2
|
1.0
|
N
|
B:GLY232
|
4.6
|
19.1
|
1.0
|
CA
|
B:VAL309
|
4.6
|
20.3
|
1.0
|
N
|
B:LEU270
|
4.7
|
26.3
|
1.0
|
CB
|
B:VAL231
|
4.9
|
18.4
|
1.0
|
CB
|
B:LEU270
|
4.9
|
28.6
|
1.0
|
CG
|
B:LEU270
|
5.0
|
31.4
|
1.0
|
|
Caesium binding site 4 out
of 5 in 7k0b
Go back to
Caesium Binding Sites List in 7k0b
Caesium binding site 4 out
of 5 in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
 Mono view
 Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 4 of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs420
b:23.1
occ:0.30
|
CS
|
B:CS420
|
0.0
|
23.1
|
0.3
|
CS
|
B:CS420
|
1.0
|
22.2
|
0.5
|
CS
|
B:CS420
|
1.9
|
46.1
|
0.2
|
O
|
B:GLY268
|
2.9
|
23.9
|
1.0
|
O
|
B:SER308
|
3.1
|
22.7
|
1.0
|
O
|
B:GLY232
|
3.3
|
20.9
|
1.0
|
O
|
B:PHE306
|
3.6
|
29.6
|
1.0
|
OE1
|
B:GLU256
|
3.6
|
24.7
|
1.0
|
O
|
B:VAL231
|
3.9
|
19.3
|
1.0
|
CD1
|
B:LEU270
|
4.0
|
32.0
|
1.0
|
C
|
B:GLY232
|
4.0
|
19.9
|
1.0
|
C
|
B:GLY268
|
4.0
|
24.3
|
1.0
|
C
|
B:SER308
|
4.3
|
23.3
|
1.0
|
CA
|
B:GLY232
|
4.3
|
19.4
|
1.0
|
O
|
B:LEU304
|
4.5
|
28.1
|
1.0
|
CD
|
B:PRO257
|
4.5
|
20.2
|
1.0
|
CG
|
B:LEU270
|
4.6
|
31.4
|
1.0
|
CD
|
B:GLU256
|
4.6
|
23.0
|
1.0
|
CB
|
B:VAL309
|
4.6
|
20.4
|
1.0
|
C
|
B:VAL231
|
4.7
|
18.7
|
1.0
|
CA
|
B:GLY268
|
4.7
|
24.9
|
1.0
|
C
|
B:PHE306
|
4.7
|
30.8
|
1.0
|
N
|
B:LEU270
|
4.8
|
26.3
|
1.0
|
CG
|
B:GLU256
|
4.8
|
21.9
|
1.0
|
CB
|
B:LEU270
|
4.8
|
28.6
|
1.0
|
N
|
B:SER308
|
4.8
|
26.6
|
1.0
|
CD2
|
B:PHE306
|
4.9
|
32.0
|
1.0
|
CG2
|
B:VAL309
|
4.9
|
20.8
|
1.0
|
N
|
B:GLY232
|
4.9
|
19.1
|
1.0
|
CG
|
B:PRO257
|
4.9
|
20.0
|
1.0
|
CA
|
B:VAL309
|
4.9
|
20.3
|
1.0
|
CB
|
B:PHE306
|
5.0
|
31.4
|
1.0
|
|
Caesium binding site 5 out
of 5 in 7k0b
Go back to
Caesium Binding Sites List in 7k0b
Caesium binding site 5 out
of 5 in the The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step
 Mono view
 Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 5 of The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs420
b:46.1
occ:0.20
|
CS
|
B:CS420
|
0.0
|
46.1
|
0.2
|
CS
|
B:CS420
|
1.9
|
23.1
|
0.3
|
O
|
B:PHE306
|
2.7
|
29.6
|
1.0
|
CS
|
B:CS420
|
2.8
|
22.2
|
0.5
|
O
|
B:LEU304
|
2.8
|
28.1
|
1.0
|
O
|
B:GLY268
|
3.2
|
23.9
|
1.0
|
N
|
B:PHE306
|
3.5
|
33.2
|
1.0
|
C
|
B:PHE306
|
3.7
|
30.8
|
1.0
|
C
|
B:LEU304
|
3.9
|
28.3
|
1.0
|
C
|
B:GLY268
|
4.0
|
24.3
|
1.0
|
CA
|
B:GLY268
|
4.0
|
24.9
|
1.0
|
CG
|
B:PRO257
|
4.0
|
20.0
|
1.0
|
CA
|
B:PHE306
|
4.0
|
31.6
|
1.0
|
CB
|
B:PHE306
|
4.1
|
31.4
|
1.0
|
O
|
B:GLY232
|
4.1
|
20.9
|
1.0
|
O
|
B:SER308
|
4.2
|
22.7
|
1.0
|
CA
|
B:GLY232
|
4.2
|
19.4
|
1.0
|
CD
|
B:PRO257
|
4.2
|
20.2
|
1.0
|
O
|
B:VAL231
|
4.3
|
19.3
|
1.0
|
C
|
B:GLY232
|
4.4
|
19.9
|
1.0
|
OG
|
B:SER297
|
4.5
|
39.1
|
1.0
|
CD1
|
B:LEU270
|
4.6
|
32.0
|
1.0
|
C
|
B:ASP305
|
4.6
|
35.9
|
1.0
|
CA
|
B:ASP305
|
4.8
|
35.1
|
1.0
|
N
|
B:ASP305
|
4.8
|
30.1
|
1.0
|
CA
|
B:LEU304
|
4.8
|
25.9
|
1.0
|
CB
|
B:SER297
|
4.8
|
36.9
|
1.0
|
N
|
B:PRO307
|
4.9
|
30.9
|
1.0
|
CD2
|
B:PHE306
|
4.9
|
32.0
|
1.0
|
|
Reference:
E.Hilario,
M.F.Dunn,
L.J.Mueller.
The Internal Aldimine Form of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with Cesium Ion at the Metal Coordination Site. A Random Beta-P270L Mutation Was Inserted During Pcr Step. To Be Published.
Page generated: Tue Jul 30 21:11:39 2024
|