Atomistry » Caesium » PDB 4hul-6dwe » 5k6u
Atomistry »
  Caesium »
    PDB 4hul-6dwe »
      5k6u »

Caesium in PDB 5k6u: Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1

Protein crystallography data

The structure of Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1, PDB code: 5k6u was solved by X.Jin, K.M.Goodman, S.Mannepalli, B.Honig, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.19 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 163.072, 49.260, 60.728, 90.00, 110.50, 90.00
R / Rfree (%) 19.1 / 22.8

Other elements in 5k6u:

The structure of Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1 also contains other interesting chemical elements:

Iodine (I) 6 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1 (pdb code 5k6u). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total only one binding site of Caesium was determined in the Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1, PDB code: 5k6u:

Caesium binding site 1 out of 1 in 5k6u

Go back to Caesium Binding Sites List in 5k6u
Caesium binding site 1 out of 1 in the Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Sidekick-1 Immunoglobulin Domains 1-4, Crystal Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs411

b:60.1
occ:0.42
O A:PRO294 2.9 38.4 1.0
O A:HIS372 3.1 28.4 1.0
OG1 A:THR371 3.3 34.5 1.0
O A:HOH636 3.4 52.5 1.0
O A:HOH623 3.6 55.0 1.0
OE1 A:GLU293 3.9 59.0 1.0
C A:PRO294 4.1 38.1 1.0
N A:SER296 4.2 44.7 1.0
C A:GLU295 4.2 41.3 1.0
CA A:SER296 4.2 44.2 1.0
O A:GLU295 4.2 26.8 1.0
C A:HIS372 4.2 28.8 1.0
N A:HIS372 4.3 35.6 1.0
CG A:PRO294 4.6 31.3 1.0
CD A:PRO294 4.6 36.2 1.0
CB A:GLU293 4.7 48.2 1.0
CB A:SER296 4.7 51.6 1.0
CB A:THR371 4.7 37.8 1.0
N A:PRO294 4.8 42.5 1.0
CA A:GLU295 4.8 42.8 1.0
N A:GLU295 4.9 40.7 1.0
CA A:HIS372 4.9 34.5 1.0
CA A:PRO294 5.0 36.4 1.0

Reference:

K.M.Goodman, M.Yamagata, X.Jin, S.Mannepalli, P.S.Katsamba, G.Ahlsen, A.P.Sergeeva, B.Honig, J.R.Sanes, L.Shapiro. Molecular Basis of Sidekick-Mediated Cell-Cell Adhesion and Specificity. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27644106
DOI: 10.7554/ELIFE.19058
Page generated: Tue Jul 30 20:44:09 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy