Atomistry » Caesium » PDB 4hul-6dwe » 4qmg
Atomistry »
  Caesium »
    PDB 4hul-6dwe »
      4qmg »

Caesium in PDB 4qmg: The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions

Protein crystallography data

The structure of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions, PDB code: 4qmg was solved by F.Guo, V.Stanevich, L.Wan, K.Satyshur, Y.Kang, Y.Xing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 121.830, 65.715, 135.841, 90.00, 96.31, 90.00
R / Rfree (%) 19 / 24.8

Caesium Binding Sites:

The binding sites of Caesium atom in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions (pdb code 4qmg). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 5 binding sites of Caesium where determined in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions, PDB code: 4qmg:
Jump to Caesium binding site number: 1; 2; 3; 4; 5;

Caesium binding site 1 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 1 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs402

b:1.0
occ:1.00
O A:SER165 3.2 85.2 1.0
O A:MSE163 3.4 57.8 1.0
O A:GLY167 3.4 54.1 1.0
O A:HOH537 3.8 63.6 1.0
N A:GLY167 4.4 62.2 1.0
C A:SER165 4.4 79.3 1.0
C A:GLY167 4.5 59.2 1.0
C A:MSE163 4.6 53.2 1.0
O A:HOH523 4.9 56.6 1.0
C A:TRP164 4.9 50.2 1.0
N A:SER165 4.9 67.4 1.0
CA A:TRP164 4.9 44.7 1.0

Caesium binding site 2 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 2 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs402

b:0.3
occ:1.00
O B:GLY167 3.2 59.6 1.0
O B:SER165 3.3 59.4 1.0
O B:HOH556 3.4 79.0 1.0
O B:MSE163 3.4 56.1 1.0
O B:HOH555 3.5 66.0 1.0
O B:HOH551 3.8 50.0 1.0
O B:HOH550 4.4 45.7 1.0
C B:GLY167 4.4 56.3 1.0
C B:SER165 4.5 43.9 1.0
N B:GLY167 4.5 39.6 1.0
C B:MSE163 4.6 50.2 1.0
CA B:GLU166 4.8 52.9 1.0
C B:TRP164 4.8 48.1 1.0
O B:TRP164 4.9 43.5 1.0

Caesium binding site 3 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 3 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs402

b:0.1
occ:1.00
O C:SER165 3.2 0.8 1.0
O C:MSE163 3.2 75.7 1.0
O C:HOH543 3.2 72.7 1.0
O C:GLY167 3.4 71.7 1.0
O C:HOH533 4.2 57.0 1.0
C C:MSE163 4.2 68.0 1.0
C C:SER165 4.3 93.6 1.0
C C:GLY167 4.6 75.0 1.0
C C:TRP164 4.6 66.8 1.0
N C:GLY167 4.7 89.5 1.0
O C:TRP164 4.7 72.5 1.0
CA C:TRP164 4.7 56.4 1.0
CA C:GLU166 4.8 98.8 1.0
N C:TRP164 4.9 62.8 1.0
N C:SER165 5.0 77.1 1.0

Caesium binding site 4 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 4 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs402

b:1.0
occ:1.00
O D:GLY167 3.2 73.4 1.0
O D:SER165 3.2 78.7 1.0
O D:MSE163 3.3 57.6 1.0
O D:HOH543 3.3 64.6 1.0
C D:GLY167 4.3 70.1 1.0
C D:MSE163 4.4 53.8 1.0
C D:SER165 4.4 72.5 1.0
N D:GLY167 4.5 66.4 1.0
C D:TRP164 4.7 49.6 1.0
CA D:TRP164 4.7 45.6 1.0
N D:SER165 4.8 53.8 1.0
O D:TRP164 4.9 42.1 1.0

Caesium binding site 5 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 5 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs402

b:0.1
occ:1.00
O E:SER165 3.2 71.6 1.0
O E:MSE163 3.4 65.3 1.0
O E:HOH537 3.5 66.0 1.0
O E:GLY167 3.6 62.1 1.0
C E:MSE163 4.4 60.0 1.0
C E:SER165 4.4 60.4 1.0
N E:SER165 4.7 43.9 1.0
C E:GLY167 4.8 65.5 1.0
C E:TRP164 4.8 50.9 1.0
CA E:TRP164 4.9 55.9 1.0

Reference:

F.Guo, L.Wan, A.Zheng, V.Stanevich, Y.Wei, K.A.Satyshur, M.Shen, W.Lee, Y.Kang, Y.Xing. Structural Insights Into the Tumor-Promoting Function of the Mtdh-SND1 Complex. Cell Rep V. 8 1704 2014.
ISSN: ESSN 2211-1247
PubMed: 25242325
DOI: 10.1016/J.CELREP.2014.08.033
Page generated: Sun Dec 13 10:56:36 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy