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Caesium in PDB 4qmg: The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions

Protein crystallography data

The structure of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions, PDB code: 4qmg was solved by F.Guo, V.Stanevich, L.Wan, K.Satyshur, Y.Kang, Y.Xing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 121.830, 65.715, 135.841, 90.00, 96.31, 90.00
R / Rfree (%) 19 / 24.8

Caesium Binding Sites:

The binding sites of Caesium atom in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions (pdb code 4qmg). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 5 binding sites of Caesium where determined in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions, PDB code: 4qmg:
Jump to Caesium binding site number: 1; 2; 3; 4; 5;

Caesium binding site 1 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 1 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs402

b:1.0
occ:1.00
 O A:SER165 3.2 85.2 1.0
O A:MSE163 3.4 57.8 1.0
O A:GLY167 3.4 54.1 1.0
O A:HOH537 3.8 63.6 1.0
N A:GLY167 4.4 62.2 1.0
C A:SER165 4.4 79.3 1.0
C A:GLY167 4.5 59.2 1.0
C A:MSE163 4.6 53.2 1.0
O A:HOH523 4.9 56.6 1.0
C A:TRP164 4.9 50.2 1.0
N A:SER165 4.9 67.4 1.0
CA A:TRP164 4.9 44.7 1.0

Caesium binding site 2 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 2 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs402

b:0.3
occ:1.00
 O B:GLY167 3.2 59.6 1.0
O B:SER165 3.3 59.4 1.0
O B:HOH556 3.4 79.0 1.0
O B:MSE163 3.4 56.1 1.0
O B:HOH555 3.5 66.0 1.0
O B:HOH551 3.8 50.0 1.0
O B:HOH550 4.4 45.7 1.0
C B:GLY167 4.4 56.3 1.0
C B:SER165 4.5 43.9 1.0
N B:GLY167 4.5 39.6 1.0
C B:MSE163 4.6 50.2 1.0
CA B:GLU166 4.8 52.9 1.0
C B:TRP164 4.8 48.1 1.0
O B:TRP164 4.9 43.5 1.0

Caesium binding site 3 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 3 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs402

b:0.1
occ:1.00
 O C:SER165 3.2 0.8 1.0
O C:MSE163 3.2 75.7 1.0
O C:HOH543 3.2 72.7 1.0
O C:GLY167 3.4 71.7 1.0
O C:HOH533 4.2 57.0 1.0
C C:MSE163 4.2 68.0 1.0
C C:SER165 4.3 93.6 1.0
C C:GLY167 4.6 75.0 1.0
C C:TRP164 4.6 66.8 1.0
N C:GLY167 4.7 89.5 1.0
O C:TRP164 4.7 72.5 1.0
CA C:TRP164 4.7 56.4 1.0
CA C:GLU166 4.8 98.8 1.0
N C:TRP164 4.9 62.8 1.0
N C:SER165 5.0 77.1 1.0

Caesium binding site 4 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 4 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs402

b:1.0
occ:1.00
 O D:GLY167 3.2 73.4 1.0
O D:SER165 3.2 78.7 1.0
O D:MSE163 3.3 57.6 1.0
O D:HOH543 3.3 64.6 1.0
C D:GLY167 4.3 70.1 1.0
C D:MSE163 4.4 53.8 1.0
C D:SER165 4.4 72.5 1.0
N D:GLY167 4.5 66.4 1.0
C D:TRP164 4.7 49.6 1.0
CA D:TRP164 4.7 45.6 1.0
N D:SER165 4.8 53.8 1.0
O D:TRP164 4.9 42.1 1.0

Caesium binding site 5 out of 5 in 4qmg

Go back to Caesium Binding Sites List in 4qmg
Caesium binding site 5 out of 5 in the The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of The Structure of Mtdh-SND1 Complex Reveals Novel Cancer-Promoting Interactions within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs402

b:0.1
occ:1.00
 O E:SER165 3.2 71.6 1.0
O E:MSE163 3.4 65.3 1.0
O E:HOH537 3.5 66.0 1.0
O E:GLY167 3.6 62.1 1.0
C E:MSE163 4.4 60.0 1.0
C E:SER165 4.4 60.4 1.0
N E:SER165 4.7 43.9 1.0
C E:GLY167 4.8 65.5 1.0
C E:TRP164 4.8 50.9 1.0
CA E:TRP164 4.9 55.9 1.0

Reference:

F.Guo, L.Wan, A.Zheng, V.Stanevich, Y.Wei, K.A.Satyshur, M.Shen, W.Lee, Y.Kang, Y.Xing. Structural Insights Into the Tumor-Promoting Function of the Mtdh-SND1 Complex. Cell Rep V. 8 1704 2014.
ISSN: ESSN 2211-1247
PubMed: 25242325
DOI: 10.1016/J.CELREP.2014.08.033
Page generated: Sun Dec 13 10:56:36 2020

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