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Caesium in PDB 4l9b: Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)

Protein crystallography data

The structure of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative), PDB code: 4l9b was solved by C.Farenc, S.Spinelli, C.Bebeacua, D.Tremblay, I.Orlov, S.Blangy, B.P.Klaholz, S.Moineau, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.36 / 1.75
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 107.610, 107.610, 107.610, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.1

Caesium Binding Sites:

The binding sites of Caesium atom in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) (pdb code 4l9b). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 6 binding sites of Caesium where determined in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative), PDB code: 4l9b:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6;

Caesium binding site 1 out of 6 in 4l9b

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Caesium binding site 1 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs401

b:0.3
occ:0.34
O A:HOH753 2.7 40.2 0.9
O A:SER45 2.7 63.6 1.0
O A:HOH755 2.7 52.9 1.0
C A:SER45 3.8 64.5 1.0
O A:GLN81 4.0 50.8 1.0
O A:HOH730 4.1 52.6 1.0
O A:THR78 4.2 54.6 1.0
ND2 A:ASN46 4.3 93.0 1.0
O A:HOH857 4.4 71.5 0.9
N A:GLY159 4.4 51.2 1.0
N A:GLY80 4.5 49.4 1.0
CG A:ASN46 4.6 99.1 1.0
CB A:SER45 4.6 65.2 1.0
O A:HOH790 4.7 48.5 1.0
N A:ASN46 4.7 61.0 1.0
CA A:SER45 4.7 62.1 1.0
CA A:ASN46 4.7 61.3 1.0
CG2 A:THR158 4.8 60.9 1.0
N A:GLN81 4.9 48.9 0.9
OD1 A:ASN46 4.9 96.9 1.0
CA A:THR79 4.9 52.5 1.0
C A:GLN81 5.0 51.8 0.9
CA A:THR158 5.0 51.1 1.0

Caesium binding site 2 out of 6 in 4l9b

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Caesium binding site 2 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs402

b:38.0
occ:0.27
O A:HOH811 2.8 51.4 0.9
O A:HOH641 2.8 39.6 1.0
O A:GLY80 3.0 51.0 1.0
OE2 A:GLU84 3.2 61.9 1.0
O A:SER82 3.4 53.0 1.0
N A:SER82 3.7 46.7 1.0
OG A:SER82 4.0 63.0 0.9
O A:HOH774 4.0 63.4 1.0
CD A:GLU84 4.2 67.8 1.0
C A:GLY80 4.2 52.2 1.0
CA A:GLN81 4.3 48.4 0.9
C A:SER82 4.4 52.7 1.0
C A:GLN81 4.5 51.8 0.9
CA A:SER82 4.5 46.7 1.0
CG A:GLU84 4.6 57.1 1.0
O A:HOH637 4.6 52.7 1.0
N A:GLN81 4.7 48.9 0.9
O A:HOH742 4.8 51.0 1.0
CB A:SER82 4.9 51.9 1.0

Caesium binding site 3 out of 6 in 4l9b

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Caesium binding site 3 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs403

b:68.3
occ:0.44
O A:TYR164 2.9 37.0 1.0
O A:HOH678 3.0 53.0 1.0
O A:HOH733 3.0 53.9 1.0
CE1 A:TYR164 3.5 20.0 1.0
O A:HOH536 3.6 34.6 1.0
CD1 A:TYR164 3.8 20.0 1.0
CZ A:TYR164 3.8 20.0 1.0
C A:TYR164 4.1 39.3 0.9
CG A:TYR164 4.3 20.0 1.0
OH A:TYR164 4.3 20.0 1.0
CE2 A:TYR164 4.3 20.0 1.0
O A:HOH734 4.5 67.8 1.0
CD2 A:TYR164 4.5 20.0 1.0
N A:TYR164 4.8 40.8 0.9
CA A:TYR164 4.9 40.9 0.9
N A:GLU165 5.0 33.3 1.0

Caesium binding site 4 out of 6 in 4l9b

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Caesium binding site 4 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs404

b:25.0
occ:0.42
O A:HOH529 3.0 33.0 1.0
OG A:SER233 3.1 33.0 1.0
O A:GLN234 3.2 25.9 0.9
O A:HOH544 3.2 29.4 1.0
O A:HOH651 3.3 38.6 0.9
O A:HOH624 3.3 29.6 1.0
O A:HOH642 3.5 40.5 1.0
CB A:SER233 3.8 28.7 1.0
O A:HOH713 4.0 38.1 1.0
CD A:PRO236 4.2 26.5 0.9
O A:HOH754 4.2 39.7 1.0
C A:GLN234 4.3 26.8 1.0
CG A:PRO236 4.6 29.9 1.0
O A:HOH601 4.6 35.5 1.0
O A:LEU295 4.6 28.2 1.0
N A:GLN234 4.6 24.7 1.0
CG2 A:VAL246 4.7 27.0 1.0
N A:PRO236 4.7 24.3 0.9
C A:SER233 4.8 27.2 1.0
OE2 A:GLU248 4.8 32.3 1.0
CB A:PRO236 4.8 27.0 0.9
CA A:SER233 4.9 24.6 0.9
CB A:VAL246 4.9 27.0 1.0

Caesium binding site 5 out of 6 in 4l9b

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Caesium binding site 5 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs405

b:0.8
occ:0.32
CD A:ARG254 3.6 38.0 1.0
NE A:ARG254 4.0 57.8 1.0
OD1 A:ASP256 4.0 42.3 1.0
CG1 A:VAL331 4.3 33.1 1.0
CZ A:ARG254 4.4 79.2 1.0
NH1 A:ARG254 4.6 68.7 1.0
CG2 A:VAL331 4.7 33.7 0.9
CG A:ASP256 4.8 42.7 0.9
CG A:ARG254 4.9 31.2 1.0
OD2 A:ASP256 4.9 54.7 0.9

Caesium binding site 6 out of 6 in 4l9b

Go back to Caesium Binding Sites List in 4l9b
Caesium binding site 6 out of 6 in the Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Structure of Native Rbp From Lactococcal Phage 1358 (Csi Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs406

b:0.7
occ:0.27
CB A:ALA25 4.5 50.3 0.9
CG2 A:ILE21 4.5 60.2 1.0

Reference:

C.Farenc, S.Spinelli, C.Bebeacua, D.Tremblay, I.Orlov, S.Blangy, B.P.Klaholz, S.Moineau, C.Cambillau. A Virulent Siphophage Cyoem Structure and Host Recognition and Infection Mechanism To Be Published.
Page generated: Sun Dec 13 10:56:30 2020

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