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Caesium in PDB 2f9c: Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6

Protein crystallography data

The structure of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6, PDB code: 2f9c was solved by J.Benach, Y.Chen, S.M.Vorobiev, J.Seetharaman, H.Janjua, B.Cooper, X.T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.602, 104.602, 162.423, 90.00, 90.00, 90.00
R / Rfree (%) 25.3 / 32.3

Caesium Binding Sites:

The binding sites of Caesium atom in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 (pdb code 2f9c). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 6 binding sites of Caesium where determined in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6, PDB code: 2f9c:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6;

Caesium binding site 1 out of 6 in 2f9c

Go back to Caesium Binding Sites List in 2f9c
Caesium binding site 1 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs400

b:27.9
occ:0.59
SG A:CYS276 3.4 40.8 1.0
CB A:CYS276 3.7 30.3 1.0
OE2 A:GLU257 3.7 39.2 1.0
ND2 B:ASN161 3.8 26.5 1.0
CD A:GLU257 3.8 38.7 1.0
CB A:GLU257 4.0 30.4 1.0
CD1 B:LEU133 4.1 31.9 1.0
OE1 A:GLU257 4.2 39.8 1.0
CA A:CYS276 4.2 28.0 1.0
CG A:GLU257 4.3 35.1 1.0
O A:GLU257 4.5 28.2 1.0
N A:ILE277 4.5 26.4 1.0
C A:CYS276 4.7 27.6 1.0
CG B:LEU133 4.8 31.8 1.0
CD A:ARG259 4.9 35.4 1.0
CG B:ASN161 4.9 25.5 1.0
OE1 A:GLN278 4.9 36.9 1.0
C A:GLU257 5.0 27.8 1.0
CB A:GLN278 5.0 29.7 1.0

Caesium binding site 2 out of 6 in 2f9c

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Caesium binding site 2 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs401

b:27.9
occ:0.44
SG A:CYS205 3.4 40.0 1.0
CD A:GLU183 3.8 43.5 1.0
CG A:GLU183 4.0 40.4 1.0
O A:HOH417 4.0 45.6 1.0
OE1 A:GLU183 4.0 45.0 1.0
OE2 A:GLU183 4.0 45.6 1.0
CB A:CYS205 4.2 35.4 1.0
CB A:GLU183 4.6 38.2 1.0
CA A:CYS205 4.6 33.5 1.0
CB A:TRP203 4.6 28.8 1.0
O A:ILE204 4.8 29.3 1.0
CB A:PHE181 4.9 24.8 1.0
O A:PHE181 4.9 28.4 1.0
CG A:TRP203 4.9 30.6 1.0

Caesium binding site 3 out of 6 in 2f9c

Go back to Caesium Binding Sites List in 2f9c
Caesium binding site 3 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs402

b:27.9
occ:0.10
SG A:CYS207 4.0 41.7 1.0
CD2 A:TYR230 5.0 30.1 1.0

Caesium binding site 4 out of 6 in 2f9c

Go back to Caesium Binding Sites List in 2f9c
Caesium binding site 4 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs403

b:27.9
occ:0.59
SG B:CYS276 3.4 43.1 1.0
CD B:GLU257 3.8 40.0 1.0
OE2 B:GLU257 3.8 40.3 1.0
CB B:CYS276 3.9 31.8 1.0
CB B:GLU257 4.0 31.7 1.0
O B:GLU257 4.1 28.1 1.0
CA B:CYS276 4.1 28.5 1.0
CG B:GLU257 4.1 36.3 1.0
OE1 B:GLU257 4.2 43.6 1.0
CD1 A:LEU133 4.2 34.9 1.0
CD B:ARG259 4.4 35.8 1.0
CG B:ARG259 4.5 35.7 1.0
N B:ILE277 4.6 26.4 1.0
C B:CYS276 4.6 27.4 1.0
C B:GLU257 4.7 28.6 1.0
O B:ILE277 4.9 24.6 1.0
OE1 B:GLN278 5.0 28.6 1.0
CA B:GLU257 5.0 29.3 1.0

Caesium binding site 5 out of 6 in 2f9c

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Caesium binding site 5 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs404

b:27.9
occ:0.44
OE2 B:GLU183 3.6 49.9 1.0
CD B:GLU183 3.7 48.0 1.0
OE1 B:GLU183 3.7 50.0 1.0
SG B:CYS205 3.7 45.0 1.0
CE3 B:TRP203 3.9 36.8 1.0
CD2 B:TRP203 4.0 36.9 1.0
CB B:TRP203 4.1 32.3 1.0
CG B:TRP203 4.2 35.4 1.0
CG B:GLU183 4.5 44.4 1.0
CZ3 B:TRP203 4.6 36.4 1.0
CB B:PHE181 4.7 27.8 1.0
CB B:CYS205 4.8 38.3 1.0
CE2 B:TRP203 4.8 37.0 1.0
CD1 B:TRP203 5.0 36.8 1.0

Caesium binding site 6 out of 6 in 2f9c

Go back to Caesium Binding Sites List in 2f9c
Caesium binding site 6 out of 6 in the Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Crystal Structure of Ydck From Salmonella Cholerae. Nesg Target SCR6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs405

b:27.9
occ:0.10
OD2 B:ASP206 3.8 38.9 1.0
SG B:CYS207 4.0 42.1 1.0
CB B:ASP206 4.3 36.8 1.0
CD2 B:TYR230 4.5 35.5 1.0
CG B:ASP206 4.6 38.2 1.0

Reference:

J.Benach, Y.Chen, S.M.Vorobiev, J.Seetharaman, X.Rong, G.T.Montelione, L.Tong. Crystal Structure of Ydck From Salmonella Cholerae Nesg Target SCR6. To Be Published.
Page generated: Sun Dec 13 10:55:46 2020

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