Atomistry » Caesium » PDB 1av2-2j9x » 1zqf
Atomistry »
  Caesium »
    PDB 1av2-2j9x »
      1zqf »

Caesium in PDB 1zqf: Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar)

Protein crystallography data

The structure of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar), PDB code: 1zqf was solved by H.Pelletier, M.R.Sawaya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 178.892, 57.773, 48.395, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / n/a

Caesium Binding Sites:

The binding sites of Caesium atom in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar) (pdb code 1zqf). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 2 binding sites of Caesium where determined in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar), PDB code: 1zqf:
Jump to Caesium binding site number: 1; 2;

Caesium binding site 1 out of 2 in 1zqf

Go back to Caesium Binding Sites List in 1zqf
Caesium binding site 1 out of 2 in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs341

b:41.6
occ:1.00
O A:THR101 2.5 14.4 1.0
OP1 P:DT6 2.6 22.1 1.0
O A:ILE106 2.8 25.3 1.0
O A:HOH601 3.0 0.0 1.0
OP2 P:DT6 3.2 19.5 1.0
O A:VAL103 3.3 5.0 1.0
P P:DT6 3.3 8.8 1.0
C A:THR101 3.7 14.4 1.0
C A:ILE106 4.0 10.6 1.0
C A:VAL103 4.1 3.3 1.0
CA A:SER104 4.2 7.0 1.0
O A:ARG102 4.3 30.5 1.0
C A:ARG102 4.3 26.6 1.0
N A:GLY105 4.4 8.2 1.0
O3' P:DA5 4.4 9.4 1.0
O5' P:DT6 4.4 5.8 1.0
N A:ILE106 4.5 1.0 1.0
N A:SER104 4.5 1.0 1.0
CA A:THR101 4.6 9.1 1.0
N A:ARG102 4.6 14.0 1.0
CA A:ARG102 4.6 19.7 1.0
N A:VAL103 4.7 26.6 1.0
CA A:ILE106 4.7 5.8 1.0
C A:SER104 4.8 5.8 1.0
CG2 A:THR101 4.8 8.3 1.0
N A:GLY107 4.9 3.0 1.0
CB A:ILE106 5.0 4.8 1.0

Caesium binding site 2 out of 2 in 1zqf

Go back to Caesium Binding Sites List in 1zqf
Caesium binding site 2 out of 2 in the Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Cscl (150 Millimolar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs342

b:59.4
occ:1.00
O A:LEU62 2.5 33.6 1.0
O A:HOH665 2.5 13.7 1.0
O A:LYS60 3.2 19.9 1.0
O A:VAL65 3.2 21.7 1.0
C A:LEU62 3.6 32.4 1.0
C A:VAL65 4.1 17.0 1.0
N A:VAL65 4.3 16.9 1.0
N A:LEU62 4.3 22.3 1.0
C A:LYS61 4.3 31.0 1.0
C A:LYS60 4.3 20.8 1.0
CA A:PRO63 4.4 29.5 1.0
N A:PRO63 4.5 32.9 1.0
O A:LYS61 4.5 33.0 1.0
CA A:VAL65 4.5 14.4 1.0
CA A:LEU62 4.6 24.3 1.0
N A:GLY64 4.7 38.9 1.0
CA A:LYS61 4.8 31.5 1.0
C A:PRO63 4.9 33.6 1.0

Reference:

H.Pelletier, M.R.Sawaya. Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human Dna Polymerase Beta By X-Ray Structural Analysis. Biochemistry V. 35 12778 1996.
ISSN: ISSN 0006-2960
PubMed: 8841120
DOI: 10.1021/BI960790I
Page generated: Tue Jul 30 20:16:50 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy