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Caesium in PDB 1zod: Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion

Enzymatic activity of Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion

All present enzymatic activity of Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion:
4.1.1.64;

Protein crystallography data

The structure of Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion, PDB code: 1zod was solved by W.Liu, M.D.Toney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 150.524, 150.524, 84.859, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 22.6

Other elements in 1zod:

The structure of Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion also contains other interesting chemical elements:

Sodium (Na) 1 atom

Caesium Binding Sites:

The binding sites of Caesium atom in the Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion (pdb code 1zod). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total only one binding site of Caesium was determined in the Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion, PDB code: 1zod:

Caesium binding site 1 out of 1 in 1zod

Go back to Caesium Binding Sites List in 1zod
Caesium binding site 1 out of 1 in the Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Crystal Structure of Dialkylglycine Decarboxylase Bound with Cesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs434

b:33.6
occ:0.68
 O A:LEU78 2.6 26.7 1.0
O A:VAL305 2.7 25.2 1.0
OD1 A:ASP307 2.8 31.1 1.0
O A:THR303 2.9 28.8 1.0
O A:HOH479 3.0 29.3 1.0
OG A:SER80 3.0 33.7 1.0
CG A:ASP307 3.6 31.7 1.0
CA A:SER80 3.8 31.6 1.0
C A:LEU78 3.8 32.4 1.0
N A:SER80 3.9 28.9 1.0
C A:THR303 3.9 30.0 1.0
C A:VAL305 3.9 28.1 1.0
CB A:SER80 4.0 29.9 1.0
C A:HIS304 4.0 26.0 1.0
N A:VAL305 4.1 23.9 1.0
CE1 A:HIS77 4.1 28.9 1.0
CA A:HIS304 4.1 24.7 1.0
C A:PHE79 4.2 31.6 1.0
OD2 A:ASP307 4.2 27.6 1.0
N A:ASP307 4.3 27.4 1.0
ND1 A:HIS77 4.4 26.0 1.0
C A:SER306 4.4 27.0 1.0
N A:HIS304 4.5 24.4 1.0
N A:LEU78 4.5 30.0 1.0
O A:THR302 4.5 29.6 1.0
CA A:ASP307 4.5 27.0 1.0
O A:PHE79 4.5 29.2 1.0
O A:HIS304 4.5 26.7 1.0
O A:SER306 4.5 25.5 1.0
CB A:ASP307 4.6 27.3 1.0
CG1 A:VAL305 4.6 25.3 1.0
CA A:VAL305 4.7 24.8 1.0
CA A:LEU78 4.7 27.7 1.0
N A:PHE79 4.8 29.7 1.0
N A:SER306 4.9 27.0 1.0
CA A:PHE79 4.9 30.3 1.0

Reference:

W.Liu, M.D.Toney. Crystal Structures of Dialkylglycine Decarboxylase Bound with Cesium Ion and Calcium Ion To Be Published.
Page generated: Sun Dec 13 10:55:43 2020

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