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Caesium in PDB 1ogp: The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals

Enzymatic activity of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals

All present enzymatic activity of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals:
1.8.3.1;

Protein crystallography data

The structure of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals, PDB code: 1ogp was solved by N.Schrader, K.Fischer, K.Theis, R.R.Mendel, G.Schwarz, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 182.57 / 2.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 222.918, 351.271, 158.282, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 26.6

Other elements in 1ogp:

The structure of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals also contains other interesting chemical elements:

Molybdenum (Mo) 6 atoms

Caesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Caesium atom in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals (pdb code 1ogp). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 12 binding sites of Caesium where determined in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals, PDB code: 1ogp:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Caesium binding site 1 out of 12 in 1ogp

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Caesium binding site 1 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs1391

b:67.8
occ:1.00
 O A:SER66 2.9 60.0 1.0
OG1 A:THR68 3.0 66.0 1.0
OD1 A:ASP223 3.2 73.0 1.0
OG A:SER66 3.4 58.1 1.0
O A:ASP223 3.4 55.7 1.0
C A:SER66 3.7 63.3 1.0
O A:HOH2021 3.8 46.7 1.0
CG A:ASP223 4.0 63.6 1.0
N A:THR68 4.1 63.2 1.0
O A:HOH2022 4.1 43.7 1.0
CB A:THR68 4.2 61.3 1.0
OD2 A:ASP223 4.3 61.0 1.0
C A:ASP223 4.5 56.8 1.0
N A:VAL67 4.5 61.7 1.0
CA A:VAL67 4.5 61.9 1.0
C A:VAL67 4.5 62.9 1.0
CB A:SER66 4.6 58.2 1.0
CA A:SER66 4.6 63.2 1.0
CA A:THR68 4.7 61.9 1.0
CA A:ASP223 4.8 55.4 1.0
N A:SER66 4.8 62.4 1.0

Caesium binding site 2 out of 12 in 1ogp

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Caesium binding site 2 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs1392

b:69.3
occ:0.50
 O A:HOH2090 1.7 42.8 1.0
O A:SER329 3.3 64.7 1.0
O A:SER331 3.3 53.4 1.0
O A:SER330 3.8 63.4 1.0
OD1 A:ASP332 3.9 58.9 1.0
C A:SER330 4.0 62.9 1.0
C A:SER331 4.1 56.1 1.0
C A:SER329 4.4 64.1 1.0
CA A:SER330 4.4 62.0 1.0
N A:SER331 4.5 60.8 1.0
NZ A:LYS322 4.7 80.5 1.0
N A:ASP332 4.7 55.2 1.0
CG A:ASP332 4.8 60.6 1.0
CA A:ASP332 4.9 54.8 1.0
CA A:SER331 4.9 60.2 1.0
N A:SER330 4.9 63.1 1.0

Caesium binding site 3 out of 12 in 1ogp

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Caesium binding site 3 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1391

b:73.9
occ:1.00
 O B:SER66 3.0 60.2 1.0
OG1 B:THR68 3.0 65.9 1.0
OD1 B:ASP223 3.4 73.4 1.0
O B:ASP223 3.5 55.9 1.0
OG B:SER66 3.6 57.6 1.0
C B:SER66 3.8 63.1 1.0
N B:THR68 4.0 63.3 1.0
CG B:ASP223 4.1 63.7 1.0
CB B:THR68 4.1 62.1 1.0
OD2 B:ASP223 4.3 61.9 1.0
C B:VAL67 4.4 63.1 1.0
CA B:VAL67 4.4 61.8 1.0
N B:VAL67 4.5 61.5 1.0
C B:ASP223 4.5 56.9 1.0
CA B:SER66 4.6 63.0 1.0
CA B:THR68 4.6 61.9 1.0
CB B:SER66 4.6 59.7 1.0
CA B:ASP223 4.8 55.5 1.0
N B:SER66 4.8 62.4 1.0
CD B:LYS78 4.9 80.5 1.0

Caesium binding site 4 out of 12 in 1ogp

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Caesium binding site 4 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1392

b:67.6
occ:0.50
 O B:HOH2073 2.6 53.7 1.0
O B:SER331 3.2 53.3 1.0
O B:SER329 3.2 64.5 1.0
O B:SER330 3.3 63.5 1.0
OD1 B:ASP332 3.4 55.4 1.0
C B:SER330 3.6 62.7 1.0
C B:SER331 3.8 56.1 1.0
CA B:SER330 4.1 61.9 1.0
N B:SER331 4.1 60.8 1.0
C B:SER329 4.3 63.9 1.0
N B:ASP332 4.4 55.2 1.0
CA B:SER331 4.5 60.1 1.0
CG B:ASP332 4.6 59.7 1.0
N B:SER330 4.6 63.3 1.0
CA B:ASP332 4.7 54.6 1.0
NZ B:LYS322 4.7 80.3 1.0

Caesium binding site 5 out of 12 in 1ogp

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Caesium binding site 5 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs1391

b:80.7
occ:1.00
 O C:SER66 3.0 60.1 1.0
OG1 C:THR68 3.0 66.8 1.0
OD2 C:ASP223 3.2 64.7 1.0
O C:ASP223 3.5 55.9 1.0
OG C:SER66 3.7 58.5 1.0
C C:SER66 3.8 63.1 1.0
N C:THR68 4.2 63.3 1.0
CB C:THR68 4.3 62.8 1.0
CG C:ASP223 4.4 66.3 1.0
C C:ASP223 4.5 57.0 1.0
N C:VAL67 4.6 61.7 1.0
C C:VAL67 4.6 63.1 1.0
CA C:VAL67 4.6 61.9 1.0
CB C:SER66 4.6 61.7 1.0
CA C:SER66 4.6 63.0 1.0
CA C:ASP223 4.8 55.5 1.0
CA C:THR68 4.8 61.9 1.0
N C:SER66 4.9 62.4 1.0

Caesium binding site 6 out of 12 in 1ogp

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Caesium binding site 6 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs1392

b:79.2
occ:0.50
 O C:HOH2070 2.2 50.6 1.0
O C:SER329 3.1 64.8 1.0
O C:SER331 3.3 53.7 1.0
OD1 C:ASP332 3.7 59.2 1.0
O C:SER330 3.9 63.7 1.0
C C:SER330 3.9 62.9 1.0
C C:SER331 4.1 56.3 1.0
C C:SER329 4.2 64.0 1.0
N C:SER331 4.4 60.8 1.0
CA C:SER330 4.4 62.0 1.0
N C:ASP332 4.7 55.2 1.0
N C:SER330 4.8 63.3 1.0
CA C:SER331 4.8 60.2 1.0
CA C:ASP332 4.8 54.6 1.0
CG C:ASP332 4.9 61.2 1.0

Caesium binding site 7 out of 12 in 1ogp

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Caesium binding site 7 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 7 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs1391

b:0.3
occ:1.00
 O D:SER66 3.0 59.9 1.0
OG1 D:THR68 3.1 67.0 1.0
O D:ASP223 3.2 56.3 1.0
OG D:SER66 3.8 59.4 1.0
OD1 D:ASP223 3.8 76.1 1.0
C D:SER66 3.9 63.2 1.0
CB D:THR68 3.9 61.0 1.0
N D:THR68 4.0 63.5 1.0
CG D:ASP223 4.1 67.7 1.0
C D:ASP223 4.2 57.1 1.0
OD2 D:ASP223 4.3 65.1 1.0
C D:VAL67 4.5 63.3 1.0
CA D:VAL67 4.5 61.8 1.0
CA D:ASP223 4.6 55.6 1.0
CA D:THR68 4.6 61.8 1.0
N D:VAL67 4.6 61.8 1.0
CB D:SER66 4.7 61.5 1.0
CA D:SER66 4.9 63.2 1.0
O D:HOH2001 4.9 57.8 1.0
CB D:ASP223 5.0 64.7 1.0

Caesium binding site 8 out of 12 in 1ogp

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Caesium binding site 8 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 8 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs1392

b:81.2
occ:0.50
 O D:HOH2074 2.1 49.9 1.0
O D:SER329 3.3 65.0 1.0
O D:SER331 3.5 53.7 1.0
OD1 D:ASP332 3.9 60.4 1.0
O D:SER330 4.2 63.6 1.0
C D:SER330 4.3 63.0 1.0
C D:SER331 4.3 56.3 1.0
C D:SER329 4.4 64.1 1.0
CA D:SER330 4.6 62.1 1.0
N D:SER331 4.7 61.0 1.0
N D:ASP332 4.9 55.4 1.0

Caesium binding site 9 out of 12 in 1ogp

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Caesium binding site 9 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 9 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs1391

b:68.7
occ:1.00
 O E:SER66 2.9 59.9 1.0
OG1 E:THR68 3.1 64.9 1.0
O E:HOH2020 3.4 45.6 1.0
O E:ASP223 3.5 55.7 1.0
OG E:SER66 3.7 56.1 1.0
C E:SER66 3.8 63.1 1.0
OD1 E:ASP223 4.0 73.9 1.0
N E:THR68 4.2 63.3 1.0
OD2 E:ASP223 4.2 64.7 1.0
CG E:ASP223 4.2 65.8 1.0
CB E:THR68 4.3 61.7 1.0
C E:ASP223 4.5 56.8 1.0
N E:VAL67 4.6 61.6 1.0
CA E:VAL67 4.6 61.8 1.0
CB E:SER66 4.6 59.0 1.0
C E:VAL67 4.6 63.0 1.0
CA E:SER66 4.6 63.2 1.0
CA E:ASP223 4.7 55.5 1.0
CA E:THR68 4.8 61.9 1.0
N E:SER66 4.9 62.5 1.0

Caesium binding site 10 out of 12 in 1ogp

Go back to Caesium Binding Sites List in 1ogp
Caesium binding site 10 out of 12 in the The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 10 of The Crystal Structure of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation in Plants and Animals within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs1392

b:73.3
occ:0.50
 O E:SER331 3.1 53.2 1.0
O E:HOH2094 3.1 70.0 1.0
O E:SER329 3.2 64.7 1.0
O E:SER330 3.2 63.6 1.0
OD1 E:ASP332 3.4 59.2 1.0
C E:SER330 3.5 62.9 1.0
C E:SER331 3.7 56.0 1.0
N E:SER331 4.1 60.8 1.0
O E:HOH2088 4.1 57.3 1.0
CA E:SER330 4.1 62.0 1.0
C E:SER329 4.3 64.1 1.0
N E:ASP332 4.3 55.2 1.0
NZ E:LYS322 4.4 80.2 1.0
O E:HOH2093 4.4 58.8 1.0
CA E:SER331 4.4 60.2 1.0
CG E:ASP332 4.6 62.0 1.0
CA E:ASP332 4.6 54.8 1.0
N E:SER330 4.7 63.3 1.0

Reference:

N.Schrader, K.Fischer, K.Theis, R.R.Mendel, G.Schwarz, C.Kisker. The Crystal Structure of Plant Sulfite Oxidase Provides Insights Into Sulfite Oxidation in Plants and Animals Structure V. 11 1251 2003.
ISSN: ISSN 0969-2126
PubMed: 14527393
DOI: 10.1016/J.STR.2003.09.001
Page generated: Tue Jul 30 20:11:10 2024

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