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Caesium in PDB 1gqt: Activation of Ribokinase By Monovalent Cations

Enzymatic activity of Activation of Ribokinase By Monovalent Cations

All present enzymatic activity of Activation of Ribokinase By Monovalent Cations:
2.7.1.15;

Protein crystallography data

The structure of Activation of Ribokinase By Monovalent Cations, PDB code: 1gqt was solved by C.E.Andersson, S.L.Mowbray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.00 / 2.34
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.453, 62.767, 339.277, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 25.7

Caesium Binding Sites:

The binding sites of Caesium atom in the Activation of Ribokinase By Monovalent Cations (pdb code 1gqt). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 4 binding sites of Caesium where determined in the Activation of Ribokinase By Monovalent Cations, PDB code: 1gqt:
Jump to Caesium binding site number: 1; 2; 3; 4;

Caesium binding site 1 out of 4 in 1gqt

Go back to Caesium Binding Sites List in 1gqt
Caesium binding site 1 out of 4 in the Activation of Ribokinase By Monovalent Cations


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Activation of Ribokinase By Monovalent Cations within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs1309

b:27.9
occ:0.80
O A:ASP249 2.8 34.2 1.0
O A:ARG288 2.9 33.7 1.0
O A:GLY290 2.9 34.7 1.0
O A:ALA285 2.9 30.1 1.0
OD1 A:ASP249 3.0 53.6 1.0
OG A:SER294 3.1 24.9 1.0
O A:ILE251 3.2 30.5 1.0
CB A:SER294 3.4 25.2 1.0
CG A:ASP249 3.5 44.7 1.0
C A:ASP249 3.6 37.3 1.0
CB A:ASP249 3.7 40.8 1.0
C A:ALA285 3.9 31.5 1.0
C A:ARG288 4.0 34.8 1.0
CG1 A:ILE251 4.0 44.5 1.0
C A:GLY290 4.1 33.1 1.0
CA A:ASP249 4.2 40.6 1.0
CD1 A:ILE251 4.3 51.9 1.0
C A:ILE251 4.3 32.3 1.0
N A:GLY290 4.4 32.9 1.0
N A:ILE251 4.4 35.7 1.0
OD2 A:ASP249 4.5 53.0 1.0
CA A:VAL286 4.5 32.6 1.0
N A:THR250 4.5 34.6 1.0
C A:LYS289 4.6 33.4 1.0
C A:THR250 4.6 37.5 1.0
N A:VAL286 4.6 32.1 1.0
N A:LYS289 4.8 33.9 1.0
CA A:THR250 4.8 36.6 1.0
CA A:LYS289 4.8 34.5 1.0
CA A:ILE251 4.9 35.2 1.0
CA A:ALA285 4.9 30.1 1.0
CA A:GLY290 4.9 32.9 1.0
N A:ARG288 4.9 33.6 1.0
CA A:ARG288 4.9 33.0 1.0
N A:ASP249 4.9 43.6 1.0
CB A:ALA285 4.9 31.1 1.0
CB A:ILE251 5.0 37.1 1.0
CA A:SER294 5.0 26.1 1.0

Caesium binding site 2 out of 4 in 1gqt

Go back to Caesium Binding Sites List in 1gqt
Caesium binding site 2 out of 4 in the Activation of Ribokinase By Monovalent Cations


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Activation of Ribokinase By Monovalent Cations within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs1309

b:36.1
occ:0.80
O B:ARG288 2.8 42.1 1.0
O B:ILE251 2.9 33.9 1.0
O B:ASP249 3.0 40.1 1.0
OG B:SER294 3.0 34.2 1.0
O B:GLY290 3.0 40.6 1.0
O B:ALA285 3.1 42.2 1.0
CB B:SER294 3.4 33.8 1.0
OD1 B:ASP249 3.5 54.9 1.0
CG B:ASP249 3.7 52.5 1.0
C B:ASP249 3.8 44.9 1.0
N B:ILE251 4.0 37.5 1.0
C B:ILE251 4.0 33.7 1.0
CB B:ASP249 4.0 50.2 1.0
C B:ARG288 4.0 40.3 1.0
C B:ALA285 4.1 42.4 1.0
OD2 B:ASP249 4.2 61.2 1.0
C B:GLY290 4.3 39.8 1.0
C B:THR250 4.4 38.7 1.0
CA B:ILE251 4.4 35.7 1.0
CB B:ILE251 4.5 36.9 1.0
N B:THR250 4.5 41.5 1.0
CA B:VAL286 4.5 38.2 1.0
CA B:THR250 4.5 41.2 1.0
CA B:ASP249 4.6 48.3 1.0
C B:LYS289 4.6 40.6 1.0
N B:GLY290 4.6 40.3 1.0
CA B:LYS289 4.7 42.6 1.0
N B:VAL286 4.7 39.8 1.0
N B:LYS289 4.8 40.7 1.0
N B:ARG288 4.9 38.7 1.0
CA B:SER294 4.9 34.2 1.0
O B:LYS289 5.0 41.6 1.0
CB B:ALA285 5.0 40.4 1.0
CA B:ARG288 5.0 38.8 1.0

Caesium binding site 3 out of 4 in 1gqt

Go back to Caesium Binding Sites List in 1gqt
Caesium binding site 3 out of 4 in the Activation of Ribokinase By Monovalent Cations


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Activation of Ribokinase By Monovalent Cations within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs1310

b:30.1
occ:0.80
O C:ASP249 2.9 27.2 1.0
O C:GLY290 2.9 31.0 1.0
O C:ALA285 3.0 20.7 1.0
OG C:SER294 3.0 19.2 1.0
O C:ARG288 3.0 35.8 1.0
O C:ILE251 3.1 25.7 1.0
CB C:SER294 3.4 25.0 1.0
OD1 C:ASP249 3.4 49.0 1.0
CG C:ASP249 3.6 39.1 1.0
C C:ASP249 3.8 28.1 1.0
N C:ILE251 3.9 28.9 1.0
C C:ALA285 4.0 23.8 1.0
OD2 C:ASP249 4.0 52.7 1.0
CB C:ASP249 4.0 30.5 1.0
C C:ILE251 4.1 26.6 1.0
C C:GLY290 4.1 29.6 1.0
C C:ARG288 4.2 33.6 1.0
C C:THR250 4.4 28.6 1.0
N C:GLY290 4.5 31.6 1.0
CA C:ILE251 4.5 29.1 1.0
CA C:VAL286 4.5 24.2 1.0
CA C:ASP249 4.6 30.8 1.0
CB C:ILE251 4.6 28.6 1.0
C C:LYS289 4.6 33.1 1.0
N C:THR250 4.6 27.3 1.0
CA C:THR250 4.7 28.2 1.0
N C:VAL286 4.7 25.0 1.0
CA C:ALA285 4.9 26.1 1.0
CB C:ALA285 4.9 21.1 1.0
CA C:SER294 4.9 23.3 1.0
CA C:GLY290 4.9 31.3 1.0
N C:ARG288 4.9 31.9 1.0
C C:VAL286 5.0 25.0 1.0
CA C:LYS289 5.0 34.4 1.0
O C:LYS289 5.0 34.7 1.0

Caesium binding site 4 out of 4 in 1gqt

Go back to Caesium Binding Sites List in 1gqt
Caesium binding site 4 out of 4 in the Activation of Ribokinase By Monovalent Cations


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Activation of Ribokinase By Monovalent Cations within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs1309

b:35.4
occ:0.80
O D:ASP249 2.9 41.2 1.0
O D:ARG288 3.0 34.7 1.0
O D:GLY290 3.0 40.1 1.0
O D:ILE251 3.1 37.1 1.0
O D:ALA285 3.1 34.7 1.0
OG D:SER294 3.1 31.5 1.0
CB D:SER294 3.5 32.2 1.0
CG D:ASP249 3.6 56.7 1.0
C D:ASP249 3.7 46.8 1.0
OD2 D:ASP249 3.7 67.1 1.0
OD1 D:ASP249 3.8 60.7 1.0
CB D:ASP249 3.9 51.4 1.0
C D:ARG288 4.1 38.5 1.0
C D:ALA285 4.1 34.4 1.0
C D:ILE251 4.2 41.8 1.0
N D:ILE251 4.2 43.7 1.0
C D:GLY290 4.2 39.2 1.0
C D:THR250 4.4 44.4 1.0
CA D:ASP249 4.4 49.7 1.0
N D:THR250 4.5 44.3 1.0
N D:GLY290 4.6 37.3 1.0
C D:LYS289 4.6 37.3 1.0
CA D:ILE251 4.7 43.6 1.0
CA D:VAL286 4.7 34.8 1.0
CA D:THR250 4.7 45.8 1.0
N D:VAL286 4.8 33.7 1.0
CA D:LYS289 4.9 39.9 1.0
N D:LYS289 4.9 40.1 1.0
O D:THR250 4.9 44.7 1.0
CB D:ALA285 5.0 33.2 1.0
N D:ARG288 5.0 40.5 1.0
CA D:ARG288 5.0 38.4 1.0
O D:LYS289 5.0 34.5 1.0
CA D:ALA285 5.0 35.9 1.0

Reference:

C.E.Andersson, S.L.Mowbray. Activation of Ribokinase By Monovalent Cations. J.Mol.Biol. V. 315 409 2002.
ISSN: ISSN 0022-2836
PubMed: 11786021
DOI: 10.1006/JMBI.2001.5248
Page generated: Sun Dec 13 10:55:27 2020

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