Caesium in PDB 1av2: Gramicidin A/Cscl Complex, Active As A Dimer
Protein crystallography data
The structure of Gramicidin A/Cscl Complex, Active As A Dimer, PDB code: 1av2
was solved by
B.M.Burkhart,
N.Li,
D.A.Langs,
W.L.Duax,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
100.00 /
1.40
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
31.060,
31.880,
52.110,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.4 /
18.6
|
Other elements in 1av2:
The structure of Gramicidin A/Cscl Complex, Active As A Dimer also contains other interesting chemical elements:
Caesium Binding Sites:
The binding sites of Caesium atom in the Gramicidin A/Cscl Complex, Active As A Dimer
(pdb code 1av2). This binding sites where shown within
5.0 Angstroms radius around Caesium atom.
In total 7 binding sites of Caesium where determined in the
Gramicidin A/Cscl Complex, Active As A Dimer, PDB code: 1av2:
Jump to Caesium binding site number:
1;
2;
3;
4;
5;
6;
7;
Caesium binding site 1 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 1 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 1 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cs17
b:21.0
occ:0.14
|
O
|
B:HOH2001
|
1.6
|
22.7
|
0.7
|
|
CS
|
B:CS17
|
1.9
|
35.7
|
0.1
|
|
N
|
A:DLE14
|
3.4
|
14.6
|
1.0
|
|
O
|
B:GLY2
|
3.5
|
16.8
|
1.0
|
|
C
|
A:DLE14
|
3.6
|
16.0
|
1.0
|
|
O
|
B:ALA5
|
3.6
|
20.1
|
1.0
|
|
N
|
A:TRP15
|
3.7
|
16.2
|
1.0
|
|
O
|
B:HOH2004
|
3.7
|
22.6
|
0.9
|
|
C
|
B:ALA5
|
3.7
|
16.2
|
1.0
|
|
O
|
B:DLE4
|
3.8
|
20.6
|
1.0
|
|
H
|
A:TRP15
|
3.8
|
19.4
|
1.0
|
|
HA
|
B:DVA6
|
3.8
|
19.3
|
1.0
|
|
O
|
A:DLE12
|
3.8
|
19.6
|
1.0
|
|
O
|
A:DLE14
|
3.9
|
17.6
|
1.0
|
|
HA
|
A:TRP13
|
3.9
|
17.2
|
1.0
|
|
C
|
B:DLE4
|
3.9
|
16.6
|
1.0
|
|
O
|
A:TRP15
|
3.9
|
19.2
|
1.0
|
|
CA
|
A:DLE14
|
3.9
|
15.1
|
1.0
|
|
C
|
A:TRP13
|
3.9
|
13.8
|
1.0
|
|
HA
|
A:DLE14
|
4.0
|
18.1
|
1.0
|
|
C
|
A:TRP15
|
4.0
|
19.1
|
1.0
|
|
N
|
B:DVA6
|
4.0
|
16.4
|
1.0
|
|
N
|
B:DLE4
|
4.1
|
15.8
|
1.0
|
|
N
|
B:ALA5
|
4.2
|
17.0
|
1.0
|
|
HA
|
B:ALA3
|
4.2
|
19.3
|
1.0
|
|
CA
|
A:TRP13
|
4.3
|
14.4
|
1.0
|
|
H
|
B:VAL7
|
4.3
|
18.4
|
1.0
|
|
C
|
A:DLE12
|
4.3
|
14.5
|
1.0
|
|
CA
|
B:DVA6
|
4.3
|
16.1
|
1.0
|
|
O
|
B:VAL7
|
4.4
|
17.1
|
1.0
|
|
CA
|
A:TRP15
|
4.4
|
17.6
|
1.0
|
|
CA
|
B:ALA5
|
4.4
|
17.7
|
1.0
|
|
H
|
B:DVA6
|
4.4
|
19.6
|
1.0
|
|
HA
|
B:ALA5
|
4.4
|
21.3
|
1.0
|
|
C
|
B:ALA3
|
4.4
|
15.0
|
1.0
|
|
N
|
A:TRP13
|
4.5
|
13.5
|
1.0
|
|
C
|
B:GLY2
|
4.5
|
15.2
|
1.0
|
|
CA
|
B:DLE4
|
4.5
|
16.8
|
1.0
|
|
O
|
B:HOH2002
|
4.5
|
18.6
|
0.7
|
|
N
|
A:ETA16
|
4.5
|
21.4
|
1.0
|
|
HA1
|
A:ETA16
|
4.5
|
31.4
|
1.0
|
|
H
|
B:ALA5
|
4.6
|
20.4
|
1.0
|
|
HA2
|
A:ETA16
|
4.6
|
31.4
|
1.0
|
|
HA
|
A:TRP15
|
4.6
|
21.1
|
1.0
|
|
N
|
B:VAL7
|
4.6
|
15.3
|
1.0
|
|
HA
|
B:DLE4
|
4.6
|
20.1
|
1.0
|
|
C
|
B:DVA6
|
4.7
|
15.3
|
1.0
|
|
H
|
B:GLY2
|
4.7
|
18.5
|
1.0
|
|
O
|
A:TRP13
|
4.7
|
15.5
|
1.0
|
|
CA
|
B:ALA3
|
4.8
|
16.1
|
1.0
|
|
CA
|
A:ETA16
|
4.8
|
26.2
|
1.0
|
|
HN1
|
A:ETA16
|
4.9
|
25.6
|
1.0
|
|
N
|
B:ALA3
|
5.0
|
15.2
|
1.0
|
|
N
|
A:DLE12
|
5.0
|
14.1
|
1.0
|
|
H
|
A:TRP13
|
5.0
|
16.2
|
1.0
|
|
Caesium binding site 2 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 2 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 2 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cs18
b:19.8
occ:0.38
|
O
|
B:HOH2003
|
0.8
|
18.0
|
0.5
|
|
O
|
B:HOH2002
|
2.5
|
18.6
|
0.7
|
|
O
|
B:HOH2006
|
3.0
|
25.3
|
1.0
|
|
O
|
B:HOH2004
|
3.3
|
22.6
|
0.9
|
|
HA
|
A:DLE10
|
3.4
|
20.4
|
1.0
|
|
HA
|
B:DLE10
|
3.4
|
21.2
|
1.0
|
|
H
|
A:TRP11
|
3.5
|
17.9
|
1.0
|
|
O
|
B:TRP11
|
3.5
|
18.4
|
1.0
|
|
O
|
B:DVA8
|
3.6
|
16.4
|
1.0
|
|
O
|
A:DVA8
|
3.6
|
17.9
|
1.0
|
|
N
|
B:DLE10
|
3.7
|
15.3
|
1.0
|
|
N
|
A:DLE10
|
3.7
|
15.6
|
1.0
|
|
N
|
A:TRP11
|
3.7
|
14.9
|
1.0
|
|
C
|
B:DLE10
|
3.7
|
15.1
|
1.0
|
|
H
|
B:TRP11
|
3.8
|
17.7
|
1.0
|
|
C
|
A:DLE10
|
3.8
|
14.7
|
1.0
|
|
N
|
B:TRP11
|
3.8
|
14.8
|
1.0
|
|
C
|
B:TRP9
|
3.8
|
14.3
|
1.0
|
|
CA
|
A:DLE10
|
3.8
|
17.0
|
1.0
|
|
CA
|
B:DLE10
|
3.8
|
17.6
|
1.0
|
|
C
|
A:TRP9
|
3.8
|
15.9
|
1.0
|
|
O
|
A:TRP11
|
3.9
|
17.8
|
1.0
|
|
O
|
B:TRP9
|
4.0
|
16.6
|
1.0
|
|
O
|
A:TRP9
|
4.0
|
19.0
|
1.0
|
|
C
|
B:TRP11
|
4.0
|
15.5
|
1.0
|
|
C
|
A:DVA8
|
4.1
|
14.6
|
1.0
|
|
C
|
B:DVA8
|
4.1
|
13.9
|
1.0
|
|
H
|
B:DVA8
|
4.2
|
16.9
|
1.0
|
|
H
|
A:DVA8
|
4.2
|
15.5
|
1.0
|
|
O
|
B:DLE10
|
4.2
|
16.9
|
1.0
|
|
C
|
A:TRP11
|
4.3
|
13.9
|
1.0
|
|
HA
|
B:DLE12
|
4.3
|
21.8
|
1.0
|
|
O
|
A:DLE10
|
4.3
|
18.9
|
1.0
|
|
N
|
A:TRP9
|
4.4
|
14.7
|
1.0
|
|
N
|
B:TRP9
|
4.5
|
14.5
|
1.0
|
|
CA
|
B:TRP11
|
4.5
|
15.4
|
1.0
|
|
N
|
A:DVA8
|
4.5
|
12.9
|
1.0
|
|
HA
|
B:TRP9
|
4.5
|
17.0
|
1.0
|
|
CA
|
B:TRP9
|
4.5
|
14.1
|
1.0
|
|
CA
|
A:TRP9
|
4.6
|
15.6
|
1.0
|
|
HA
|
A:TRP9
|
4.6
|
18.8
|
1.0
|
|
HA
|
A:VAL7
|
4.6
|
16.2
|
1.0
|
|
N
|
B:DVA8
|
4.6
|
14.1
|
1.0
|
|
CA
|
A:TRP11
|
4.6
|
15.2
|
1.0
|
|
N
|
B:DLE12
|
4.8
|
15.1
|
1.0
|
|
HA
|
B:VAL7
|
4.8
|
19.2
|
1.0
|
|
HA
|
A:DLE12
|
4.8
|
19.4
|
1.0
|
|
O
|
A:DVA6
|
4.9
|
16.2
|
1.0
|
|
O
|
B:DVA6
|
4.9
|
18.0
|
1.0
|
|
CA
|
A:DVA8
|
4.9
|
14.7
|
1.0
|
|
H
|
A:TRP9
|
4.9
|
17.6
|
1.0
|
|
HA
|
B:TRP11
|
4.9
|
18.4
|
1.0
|
|
N
|
A:DLE12
|
4.9
|
14.1
|
1.0
|
|
H
|
B:TRP9
|
5.0
|
17.4
|
1.0
|
|
Caesium binding site 3 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 3 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 3 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs17
b:35.7
occ:0.15
|
CS
|
A:CS17
|
1.9
|
21.0
|
0.1
|
|
O
|
B:ALA5
|
3.3
|
20.1
|
1.0
|
|
HA1
|
A:ETA16
|
3.3
|
31.4
|
1.0
|
|
O
|
B:GLY2
|
3.4
|
16.8
|
1.0
|
|
O
|
B:HOH2001
|
3.5
|
22.7
|
0.7
|
|
N
|
A:ETA16
|
3.7
|
21.4
|
1.0
|
|
C
|
A:TRP15
|
3.8
|
19.1
|
1.0
|
|
O
|
A:DLE14
|
3.8
|
17.6
|
1.0
|
|
C
|
B:ALA3
|
3.9
|
15.0
|
1.0
|
|
CA
|
A:ETA16
|
3.9
|
26.2
|
1.0
|
|
N
|
B:DLE4
|
3.9
|
15.8
|
1.0
|
|
HA
|
B:DLE4
|
3.9
|
20.1
|
1.0
|
|
HN1
|
A:ETA16
|
3.9
|
25.6
|
1.0
|
|
O
|
B:ALA3
|
4.0
|
17.0
|
1.0
|
|
C
|
B:ALA5
|
4.0
|
16.2
|
1.0
|
|
C
|
B:GLY2
|
4.0
|
15.2
|
1.0
|
|
HA2
|
A:ETA16
|
4.0
|
31.4
|
1.0
|
|
C
|
B:DLE4
|
4.0
|
16.6
|
1.0
|
|
N
|
B:ALA5
|
4.0
|
17.0
|
1.0
|
|
H
|
B:ALA5
|
4.1
|
20.4
|
1.0
|
|
H
|
B:GLY2
|
4.1
|
18.5
|
1.0
|
|
C
|
A:DLE14
|
4.1
|
16.0
|
1.0
|
|
O
|
A:TRP15
|
4.1
|
19.2
|
1.0
|
|
CA
|
B:DLE4
|
4.2
|
16.8
|
1.0
|
|
HA
|
A:TRP15
|
4.2
|
21.1
|
1.0
|
|
N
|
A:TRP15
|
4.2
|
16.2
|
1.0
|
|
HA
|
B:DVA6
|
4.3
|
19.3
|
1.0
|
|
CA
|
A:TRP15
|
4.3
|
17.6
|
1.0
|
|
HA
|
B:ALA3
|
4.4
|
19.3
|
1.0
|
|
N
|
B:ALA3
|
4.4
|
15.2
|
1.0
|
|
O
|
B:DLE4
|
4.5
|
20.6
|
1.0
|
|
CA
|
B:ALA3
|
4.5
|
16.1
|
1.0
|
|
N
|
B:GLY2
|
4.5
|
15.4
|
1.0
|
|
N
|
A:DLE14
|
4.5
|
14.6
|
1.0
|
|
H
|
A:TRP15
|
4.6
|
19.4
|
1.0
|
|
O1
|
B:FVA1
|
4.6
|
27.3
|
1.0
|
|
CA
|
B:ALA5
|
4.6
|
17.7
|
1.0
|
|
N
|
B:DVA6
|
4.7
|
16.4
|
1.0
|
|
CL
|
B:CL19
|
4.7
|
44.6
|
0.5
|
|
O
|
A:DLE12
|
4.8
|
19.6
|
1.0
|
|
HA
|
B:FVA1
|
4.8
|
22.9
|
1.0
|
|
CA
|
B:GLY2
|
4.9
|
16.0
|
1.0
|
|
HA
|
A:TRP13
|
4.9
|
17.2
|
1.0
|
|
CA
|
A:DLE14
|
4.9
|
15.1
|
1.0
|
|
CA
|
B:DVA6
|
5.0
|
16.1
|
1.0
|
|
Caesium binding site 4 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 4 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 4 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs18
b:20.1
occ:0.35
|
O
|
B:HOH2008
|
0.3
|
19.2
|
0.5
|
|
O
|
A:HOH2001
|
2.7
|
29.3
|
0.7
|
|
O
|
B:HOH2006
|
3.2
|
25.3
|
1.0
|
|
O
|
B:TRP15
|
3.4
|
18.1
|
1.0
|
|
HA
|
A:DVA6
|
3.6
|
17.8
|
1.0
|
|
N
|
B:DLE14
|
3.6
|
16.7
|
1.0
|
|
O
|
A:VAL7
|
3.6
|
16.8
|
1.0
|
|
O
|
B:DLE12
|
3.6
|
19.9
|
1.0
|
|
H
|
A:VAL7
|
3.6
|
17.4
|
1.0
|
|
O
|
A:ALA5
|
3.6
|
16.7
|
1.0
|
|
HA
|
B:DLE14
|
3.7
|
21.5
|
1.0
|
|
C
|
A:ALA5
|
3.7
|
15.3
|
1.0
|
|
O
|
A:DLE4
|
3.7
|
23.1
|
1.0
|
|
C
|
B:DLE14
|
3.7
|
15.7
|
1.0
|
|
N
|
A:DVA6
|
3.8
|
14.2
|
1.0
|
|
N
|
B:TRP15
|
3.8
|
15.7
|
1.0
|
|
C
|
B:TRP13
|
3.9
|
16.6
|
1.0
|
|
H
|
B:TRP15
|
3.9
|
18.8
|
1.0
|
|
CA
|
B:DLE14
|
3.9
|
17.9
|
1.0
|
|
N
|
A:VAL7
|
3.9
|
14.5
|
1.0
|
|
C
|
B:TRP15
|
4.0
|
18.0
|
1.0
|
|
CA
|
A:DVA6
|
4.0
|
14.8
|
1.0
|
|
C
|
A:DLE4
|
4.1
|
14.8
|
1.0
|
|
O
|
B:DLE14
|
4.1
|
17.1
|
1.0
|
|
C
|
B:DLE12
|
4.1
|
15.8
|
1.0
|
|
C
|
A:DVA6
|
4.1
|
13.8
|
1.0
|
|
H
|
A:DVA6
|
4.2
|
17.0
|
1.0
|
|
O
|
A:GLY2
|
4.2
|
21.4
|
1.0
|
|
HA
|
B:TRP13
|
4.2
|
21.4
|
1.0
|
|
C
|
A:VAL7
|
4.3
|
12.7
|
1.0
|
|
O
|
B:TRP13
|
4.3
|
18.2
|
1.0
|
|
HA2
|
B:ETA16
|
4.4
|
23.9
|
0.5
|
|
HA
|
A:ALA5
|
4.4
|
18.4
|
1.0
|
|
CA
|
B:TRP13
|
4.4
|
17.8
|
1.0
|
|
CA
|
A:ALA5
|
4.4
|
15.3
|
1.0
|
|
N
|
A:DLE4
|
4.4
|
15.4
|
1.0
|
|
N
|
B:TRP13
|
4.5
|
16.3
|
1.0
|
|
N
|
A:ALA5
|
4.5
|
14.5
|
1.0
|
|
CA
|
B:TRP15
|
4.5
|
16.6
|
1.0
|
|
HA1
|
B:ETA16
|
4.6
|
23.9
|
0.5
|
|
HA
|
A:ALA3
|
4.6
|
17.4
|
1.0
|
|
N
|
B:ETA16
|
4.7
|
19.0
|
0.5
|
|
CA
|
A:VAL7
|
4.7
|
13.5
|
1.0
|
|
C
|
B:MOH511
|
4.7
|
46.8
|
0.5
|
|
N
|
B:ETA16
|
4.7
|
18.9
|
0.5
|
|
CA
|
A:DLE4
|
4.8
|
15.5
|
1.0
|
|
HB2
|
B:ETA16
|
4.9
|
26.5
|
0.5
|
|
N
|
B:DLE12
|
4.9
|
15.1
|
1.0
|
|
O
|
B:DLE10
|
4.9
|
16.9
|
1.0
|
|
HA
|
B:TRP15
|
4.9
|
19.9
|
1.0
|
|
O
|
A:DVA6
|
4.9
|
16.2
|
1.0
|
|
HA
|
A:DVA8
|
5.0
|
17.6
|
1.0
|
|
C
|
A:ALA3
|
5.0
|
14.2
|
1.0
|
|
Caesium binding site 5 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 5 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 5 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cs17
b:23.5
occ:0.37
|
O
|
D:HOH2002
|
1.4
|
24.2
|
0.8
|
|
O
|
D:HOH2001
|
2.7
|
35.1
|
0.7
|
|
O
|
D:HOH2004
|
3.3
|
22.9
|
0.9
|
|
O
|
D:DLE4
|
3.4
|
20.8
|
1.0
|
|
N
|
C:DLE14
|
3.5
|
14.4
|
1.0
|
|
H
|
C:TRP15
|
3.6
|
18.9
|
1.0
|
|
HA
|
D:DVA6
|
3.6
|
20.6
|
1.0
|
|
N
|
C:TRP15
|
3.6
|
15.7
|
1.0
|
|
C
|
C:DLE14
|
3.6
|
16.2
|
1.0
|
|
O
|
D:ALA5
|
3.7
|
18.4
|
1.0
|
|
O
|
C:TRP15
|
3.7
|
20.0
|
1.0
|
|
O
|
D:VAL7
|
3.7
|
17.5
|
1.0
|
|
O
|
D:GLY2
|
3.8
|
17.7
|
1.0
|
|
O
|
C:DLE12
|
3.8
|
22.2
|
1.0
|
|
HA
|
C:DLE14
|
3.8
|
19.8
|
1.0
|
|
C
|
D:ALA5
|
3.8
|
15.6
|
1.0
|
|
H
|
D:VAL7
|
3.8
|
17.8
|
1.0
|
|
C
|
C:TRP13
|
3.9
|
13.0
|
1.0
|
|
CA
|
C:DLE14
|
3.9
|
16.5
|
1.0
|
|
N
|
D:DVA6
|
3.9
|
15.6
|
1.0
|
|
C
|
D:DLE4
|
3.9
|
16.5
|
1.0
|
|
HA
|
C:TRP13
|
4.0
|
17.3
|
1.0
|
|
C
|
C:TRP15
|
4.0
|
16.7
|
1.0
|
|
O
|
C:DLE14
|
4.1
|
18.7
|
1.0
|
|
CA
|
D:DVA6
|
4.1
|
17.1
|
1.0
|
|
N
|
D:VAL7
|
4.1
|
14.9
|
1.0
|
|
O
|
D:HOH2005
|
4.2
|
22.0
|
0.8
|
|
N
|
D:DLE4
|
4.3
|
15.6
|
1.0
|
|
C
|
C:DLE12
|
4.3
|
15.9
|
1.0
|
|
H
|
D:DVA6
|
4.3
|
18.7
|
1.0
|
|
CA
|
C:TRP13
|
4.3
|
14.4
|
1.0
|
|
C
|
D:DVA6
|
4.3
|
15.1
|
1.0
|
|
N
|
C:TRP13
|
4.4
|
14.4
|
1.0
|
|
CA
|
C:TRP15
|
4.4
|
17.7
|
1.0
|
|
N
|
D:ALA5
|
4.4
|
17.2
|
1.0
|
|
C
|
D:VAL7
|
4.4
|
12.8
|
1.0
|
|
O
|
C:TRP13
|
4.5
|
15.1
|
1.0
|
|
HA
|
D:ALA3
|
4.5
|
18.5
|
1.0
|
|
CA
|
D:ALA5
|
4.5
|
16.8
|
1.0
|
|
HA
|
D:ALA5
|
4.6
|
20.2
|
1.0
|
|
O
|
D:HOH2003
|
4.7
|
29.1
|
0.2
|
|
N
|
C:ETA16
|
4.7
|
20.3
|
1.0
|
|
CA
|
D:DLE4
|
4.7
|
17.8
|
1.0
|
|
HA
|
C:TRP15
|
4.8
|
21.2
|
1.0
|
|
C
|
D:GLY2
|
4.8
|
15.2
|
1.0
|
|
C
|
D:ALA3
|
4.8
|
15.8
|
1.0
|
|
H
|
C:TRP13
|
4.9
|
17.2
|
1.0
|
|
HA2
|
C:ETA16
|
4.9
|
29.1
|
1.0
|
|
N
|
C:DLE12
|
4.9
|
14.2
|
1.0
|
|
HA1
|
C:ETA16
|
4.9
|
29.1
|
1.0
|
|
CA
|
D:VAL7
|
4.9
|
15.4
|
1.0
|
|
O
|
C:DLE10
|
5.0
|
19.5
|
1.0
|
|
H
|
D:GLY2
|
5.0
|
19.2
|
1.0
|
|
H
|
D:ALA5
|
5.0
|
20.7
|
1.0
|
|
Caesium binding site 6 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 6 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 6 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cs18
b:19.4
occ:0.35
|
O
|
C:HOH2001
|
0.2
|
16.6
|
0.5
|
|
O
|
D:HOH2005
|
2.5
|
22.0
|
0.8
|
|
O
|
D:HOH2007
|
3.0
|
21.7
|
1.0
|
|
HA
|
D:DLE10
|
3.3
|
23.5
|
1.0
|
|
O
|
D:HOH2004
|
3.3
|
22.9
|
0.9
|
|
HA
|
C:DLE10
|
3.6
|
19.6
|
1.0
|
|
O
|
D:TRP11
|
3.6
|
17.7
|
1.0
|
|
O
|
C:DVA8
|
3.6
|
16.7
|
1.0
|
|
O
|
D:DVA8
|
3.6
|
15.2
|
1.0
|
|
N
|
D:DLE10
|
3.6
|
15.9
|
1.0
|
|
N
|
C:DLE10
|
3.7
|
14.2
|
1.0
|
|
H
|
C:TRP11
|
3.7
|
17.6
|
1.0
|
|
C
|
D:DLE10
|
3.7
|
14.8
|
1.0
|
|
CA
|
D:DLE10
|
3.8
|
19.6
|
1.0
|
|
C
|
C:TRP9
|
3.8
|
14.6
|
1.0
|
|
C
|
D:TRP9
|
3.8
|
15.6
|
1.0
|
|
N
|
C:TRP11
|
3.8
|
14.7
|
1.0
|
|
H
|
D:TRP11
|
3.8
|
17.3
|
1.0
|
|
N
|
D:TRP11
|
3.9
|
14.4
|
1.0
|
|
C
|
C:DLE10
|
3.9
|
15.8
|
1.0
|
|
O
|
C:TRP11
|
3.9
|
18.8
|
1.0
|
|
CA
|
C:DLE10
|
3.9
|
16.3
|
1.0
|
|
C
|
C:DVA8
|
4.0
|
14.6
|
1.0
|
|
O
|
D:TRP9
|
4.0
|
17.0
|
1.0
|
|
H
|
D:DVA8
|
4.1
|
16.6
|
1.0
|
|
C
|
D:DVA8
|
4.1
|
13.0
|
1.0
|
|
O
|
C:TRP9
|
4.1
|
18.3
|
1.0
|
|
C
|
D:TRP11
|
4.1
|
15.8
|
1.0
|
|
H
|
C:DVA8
|
4.1
|
16.7
|
1.0
|
|
O
|
D:DLE10
|
4.2
|
17.9
|
1.0
|
|
C
|
C:TRP11
|
4.2
|
14.7
|
1.0
|
|
N
|
C:TRP9
|
4.2
|
15.2
|
1.0
|
|
O
|
C:DLE10
|
4.4
|
19.5
|
1.0
|
|
CA
|
C:TRP9
|
4.4
|
16.2
|
1.0
|
|
HA
|
C:TRP9
|
4.4
|
19.5
|
1.0
|
|
N
|
D:TRP9
|
4.4
|
14.0
|
1.0
|
|
HA
|
D:TRP9
|
4.5
|
17.3
|
1.0
|
|
CA
|
D:TRP9
|
4.5
|
14.4
|
1.0
|
|
N
|
D:DVA8
|
4.5
|
13.8
|
1.0
|
|
N
|
C:DVA8
|
4.5
|
13.9
|
1.0
|
|
HA
|
D:DLE12
|
4.5
|
18.2
|
1.0
|
|
CA
|
D:TRP11
|
4.6
|
15.1
|
1.0
|
|
HA
|
D:VAL7
|
4.6
|
18.5
|
1.0
|
|
CA
|
C:TRP11
|
4.6
|
14.9
|
1.0
|
|
H
|
C:TRP9
|
4.7
|
18.2
|
1.0
|
|
HA
|
C:VAL7
|
4.7
|
16.3
|
1.0
|
|
HA
|
C:DLE12
|
4.8
|
19.1
|
1.0
|
|
O
|
C:DVA6
|
4.8
|
16.6
|
1.0
|
|
CA
|
C:DVA8
|
4.8
|
15.8
|
1.0
|
|
N
|
D:DLE12
|
4.9
|
13.5
|
1.0
|
|
CA
|
D:DVA8
|
4.9
|
14.3
|
1.0
|
|
N
|
C:DLE12
|
4.9
|
14.2
|
1.0
|
|
H
|
D:TRP9
|
4.9
|
16.8
|
1.0
|
|
HA
|
C:TRP11
|
5.0
|
17.9
|
1.0
|
|
O
|
D:DVA6
|
5.0
|
16.5
|
1.0
|
|
Caesium binding site 7 out
of 7 in 1av2
Go back to
Caesium Binding Sites List in 1av2
Caesium binding site 7 out
of 7 in the Gramicidin A/Cscl Complex, Active As A Dimer
 Mono view
 Stereo pair view
|
|
A full contact list of Caesium with other atoms in the Cs binding
site number 7 of Gramicidin A/Cscl Complex, Active As A Dimer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cs19
b:31.4
occ:0.22
|
O
|
D:HOH2009
|
2.9
|
24.5
|
1.0
|
|
O
|
C:ALA5
|
3.4
|
16.7
|
1.0
|
|
O
|
D:DLE14
|
3.6
|
16.5
|
1.0
|
|
O
|
D:HOH2011
|
3.6
|
25.8
|
0.3
|
|
HA1
|
D:ETA16
|
3.7
|
33.0
|
1.0
|
|
C
|
D:TRP15
|
3.8
|
18.1
|
1.0
|
|
HO
|
D:ETA16
|
3.8
|
65.5
|
1.0
|
|
O
|
C:GLY2
|
3.8
|
20.0
|
1.0
|
|
N
|
D:ETA16
|
3.8
|
21.0
|
1.0
|
|
C
|
D:DLE14
|
4.0
|
14.7
|
1.0
|
|
O
|
D:TRP15
|
4.0
|
18.3
|
1.0
|
|
HN1
|
D:ETA16
|
4.0
|
25.2
|
1.0
|
|
H
|
C:ALA5
|
4.0
|
20.1
|
1.0
|
|
H
|
C:GLY2
|
4.1
|
19.5
|
1.0
|
|
C
|
C:ALA3
|
4.1
|
14.7
|
1.0
|
|
C
|
C:ALA5
|
4.1
|
15.1
|
1.0
|
|
O
|
D:ETA16
|
4.1
|
43.6
|
1.0
|
|
CL
|
C:CL20
|
4.1
|
45.2
|
0.5
|
|
HA
|
C:DLE4
|
4.1
|
18.2
|
1.0
|
|
N
|
C:DLE4
|
4.1
|
14.9
|
1.0
|
|
C
|
C:GLY2
|
4.1
|
14.6
|
1.0
|
|
N
|
C:ALA5
|
4.2
|
16.8
|
1.0
|
|
CA
|
D:ETA16
|
4.2
|
27.5
|
1.0
|
|
HA
|
D:TRP15
|
4.2
|
19.6
|
1.0
|
|
O
|
C:ALA3
|
4.2
|
17.7
|
1.0
|
|
N
|
D:TRP15
|
4.2
|
15.5
|
1.0
|
|
CA
|
D:TRP15
|
4.3
|
16.4
|
1.0
|
|
C
|
C:DLE4
|
4.3
|
15.5
|
1.0
|
|
HA
|
C:DVA6
|
4.4
|
18.5
|
1.0
|
|
CA
|
C:DLE4
|
4.4
|
15.2
|
1.0
|
|
HA
|
C:ALA3
|
4.4
|
18.2
|
1.0
|
|
N
|
C:ALA3
|
4.5
|
15.6
|
1.0
|
|
N
|
C:GLY2
|
4.5
|
16.2
|
1.0
|
|
N
|
D:DLE14
|
4.5
|
13.9
|
1.0
|
|
CA
|
C:ALA3
|
4.6
|
15.2
|
1.0
|
|
HA
|
C:FVA1
|
4.7
|
21.7
|
1.0
|
|
CB
|
D:ETA16
|
4.7
|
32.3
|
1.0
|
|
CA
|
C:ALA5
|
4.7
|
15.7
|
1.0
|
|
H
|
D:TRP15
|
4.8
|
18.6
|
1.0
|
|
O
|
D:DLE12
|
4.8
|
16.5
|
1.0
|
|
N
|
C:DVA6
|
4.9
|
14.3
|
1.0
|
|
CA
|
D:DLE14
|
4.9
|
15.1
|
1.0
|
|
O
|
D:HOH2010
|
4.9
|
56.2
|
1.0
|
|
CA
|
C:GLY2
|
4.9
|
16.6
|
1.0
|
|
HA
|
D:TRP13
|
5.0
|
18.6
|
1.0
|
|
H
|
C:ALA3
|
5.0
|
18.7
|
1.0
|
|
O1
|
C:FVA1
|
5.0
|
24.6
|
1.0
|
|
Reference:
B.M.Burkhart,
N.Li,
D.A.Langs,
W.A.Pangborn,
W.L.Duax.
The Conducting Form of Gramicidin A Is A Right-Handed Double-Stranded Double Helix. Proc.Natl.Acad.Sci.Usa V. 95 12950 1998.
ISSN: ISSN 0027-8424
PubMed: 9789021
DOI: 10.1073/PNAS.95.22.12950
Page generated: Tue Jul 30 20:09:01 2024
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