Caesium in PDB 6l7g: Metallo Beta-Lactamase Fold Protein (Camp Bound)
Protein crystallography data
The structure of Metallo Beta-Lactamase Fold Protein (Camp Bound), PDB code: 6l7g
was solved by
K.-Y.Lee,
D.-G.Kim,
B.-J.Lee,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.85 /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.734,
121.521,
187.256,
90,
90,
90
|
R / Rfree (%)
|
17.7 /
20.8
|
Other elements in 6l7g:
The structure of Metallo Beta-Lactamase Fold Protein (Camp Bound) also contains other interesting chemical elements:
Caesium Binding Sites:
The binding sites of Caesium atom in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
(pdb code 6l7g). This binding sites where shown within
5.0 Angstroms radius around Caesium atom.
In total 6 binding sites of Caesium where determined in the
Metallo Beta-Lactamase Fold Protein (Camp Bound), PDB code: 6l7g:
Jump to Caesium binding site number:
1;
2;
3;
4;
5;
6;
Caesium binding site 1 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 1 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 1 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cs302
b:55.9
occ:1.00
|
O
|
A:ILE26
|
3.0
|
28.4
|
1.0
|
O
|
A:CYS32
|
3.1
|
34.5
|
1.0
|
O
|
A:ASN29
|
3.2
|
30.0
|
1.0
|
O
|
A:LEU34
|
3.5
|
27.7
|
1.0
|
C
|
A:ILE26
|
4.0
|
29.6
|
1.0
|
C
|
A:CYS32
|
4.0
|
36.3
|
1.0
|
CB
|
A:CYS32
|
4.1
|
28.1
|
1.0
|
C
|
A:ASN29
|
4.2
|
31.3
|
1.0
|
O
|
A:SER27
|
4.4
|
35.2
|
1.0
|
CA
|
A:CYS32
|
4.5
|
29.6
|
1.0
|
CA
|
A:SER27
|
4.6
|
30.9
|
1.0
|
N
|
A:CYS32
|
4.6
|
28.2
|
1.0
|
CG2
|
A:ILE26
|
4.6
|
29.9
|
1.0
|
O
|
A:PRO30
|
4.6
|
38.2
|
1.0
|
C
|
A:SER27
|
4.7
|
33.1
|
1.0
|
CA
|
A:PRO30
|
4.7
|
39.9
|
1.0
|
N
|
A:SER27
|
4.7
|
30.6
|
1.0
|
C
|
A:LEU34
|
4.7
|
29.5
|
1.0
|
C
|
A:PRO30
|
4.8
|
38.6
|
1.0
|
N
|
A:PRO30
|
4.9
|
36.9
|
1.0
|
SG
|
A:CYS32
|
4.9
|
31.1
|
1.0
|
CA
|
A:ILE26
|
4.9
|
28.3
|
1.0
|
O
|
A:HOH485
|
4.9
|
34.1
|
1.0
|
|
Caesium binding site 2 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 2 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 2 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cs302
b:50.9
occ:1.00
|
O
|
B:CYS32
|
3.0
|
29.6
|
1.0
|
O
|
B:ILE26
|
3.0
|
24.7
|
1.0
|
O
|
B:ASN29
|
3.2
|
27.1
|
1.0
|
O
|
B:LEU34
|
3.6
|
29.3
|
1.0
|
C
|
B:CYS32
|
4.0
|
29.2
|
1.0
|
C
|
B:ILE26
|
4.0
|
24.9
|
1.0
|
O
|
B:HOH484
|
4.2
|
41.5
|
1.0
|
C
|
B:ASN29
|
4.2
|
25.8
|
1.0
|
CB
|
B:CYS32
|
4.2
|
24.9
|
1.0
|
O
|
B:SER27
|
4.4
|
28.8
|
1.0
|
CA
|
B:CYS32
|
4.4
|
26.9
|
1.0
|
CG2
|
B:ILE26
|
4.6
|
27.5
|
1.0
|
N
|
B:CYS32
|
4.6
|
25.4
|
1.0
|
CA
|
B:PRO30
|
4.6
|
30.0
|
1.0
|
CA
|
B:SER27
|
4.6
|
26.2
|
1.0
|
O
|
B:PRO30
|
4.6
|
30.8
|
1.0
|
C
|
B:SER27
|
4.7
|
28.2
|
1.0
|
O
|
B:HOH548
|
4.7
|
27.6
|
1.0
|
C
|
B:PRO30
|
4.7
|
29.3
|
1.0
|
N
|
B:SER27
|
4.8
|
24.2
|
1.0
|
N
|
B:PRO30
|
4.8
|
29.3
|
1.0
|
C
|
B:LEU34
|
4.8
|
25.1
|
1.0
|
SG
|
B:CYS32
|
4.8
|
27.1
|
1.0
|
CA
|
B:ILE26
|
4.9
|
24.0
|
1.0
|
N
|
B:ASN29
|
5.0
|
26.9
|
1.0
|
|
Caesium binding site 3 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 3 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 3 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cs302
b:61.6
occ:1.00
|
O
|
C:ILE26
|
3.0
|
30.9
|
1.0
|
O
|
C:CYS32
|
3.2
|
40.1
|
1.0
|
O
|
C:ASN29
|
3.3
|
34.7
|
1.0
|
O
|
C:LEU34
|
3.4
|
35.2
|
1.0
|
C
|
C:CYS32
|
4.0
|
38.8
|
1.0
|
C
|
C:ILE26
|
4.0
|
33.5
|
1.0
|
CB
|
C:CYS32
|
4.2
|
29.2
|
1.0
|
C
|
C:ASN29
|
4.3
|
34.0
|
1.0
|
CA
|
C:CYS32
|
4.5
|
32.4
|
1.0
|
O
|
C:SER27
|
4.5
|
38.0
|
1.0
|
O
|
C:HOH508
|
4.6
|
40.3
|
1.0
|
N
|
C:CYS32
|
4.6
|
32.4
|
1.0
|
CG2
|
C:ILE26
|
4.6
|
34.4
|
1.0
|
C
|
C:LEU34
|
4.6
|
35.9
|
1.0
|
CA
|
C:SER27
|
4.7
|
37.7
|
1.0
|
CA
|
C:PRO30
|
4.7
|
39.8
|
1.0
|
C
|
C:SER27
|
4.8
|
40.0
|
1.0
|
C
|
C:PRO30
|
4.8
|
40.1
|
1.0
|
N
|
C:SER27
|
4.8
|
33.3
|
1.0
|
O
|
C:PRO30
|
4.8
|
38.2
|
1.0
|
SG
|
C:CYS32
|
4.9
|
31.9
|
1.0
|
N
|
C:PRO30
|
4.9
|
38.1
|
1.0
|
CA
|
C:ILE26
|
4.9
|
32.6
|
1.0
|
|
Caesium binding site 4 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 4 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 4 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cs302
b:54.7
occ:1.00
|
O
|
D:ILE26
|
3.0
|
26.4
|
1.0
|
O
|
D:CYS32
|
3.1
|
33.0
|
1.0
|
O
|
D:ASN29
|
3.2
|
28.6
|
1.0
|
O
|
D:LEU34
|
3.6
|
29.6
|
1.0
|
C
|
D:ILE26
|
4.0
|
27.4
|
1.0
|
C
|
D:CYS32
|
4.1
|
30.5
|
1.0
|
C
|
D:ASN29
|
4.2
|
32.7
|
1.0
|
CB
|
D:CYS32
|
4.3
|
27.4
|
1.0
|
O
|
D:HOH533
|
4.5
|
36.3
|
1.0
|
CA
|
D:PRO30
|
4.5
|
35.2
|
1.0
|
CA
|
D:CYS32
|
4.5
|
28.6
|
1.0
|
N
|
D:CYS32
|
4.6
|
29.6
|
1.0
|
O
|
D:SER27
|
4.6
|
32.3
|
1.0
|
CA
|
D:SER27
|
4.6
|
30.5
|
1.0
|
O
|
D:HOH529
|
4.6
|
33.0
|
1.0
|
CG2
|
D:ILE26
|
4.6
|
28.9
|
1.0
|
O
|
D:PRO30
|
4.7
|
36.6
|
1.0
|
C
|
D:PRO30
|
4.7
|
36.1
|
1.0
|
C
|
D:SER27
|
4.8
|
32.8
|
1.0
|
N
|
D:SER27
|
4.8
|
27.1
|
1.0
|
C
|
D:LEU34
|
4.8
|
28.4
|
1.0
|
N
|
D:PRO30
|
4.8
|
37.6
|
1.0
|
SG
|
D:CYS32
|
4.9
|
27.9
|
1.0
|
CA
|
D:ILE26
|
4.9
|
24.8
|
1.0
|
|
Caesium binding site 5 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 5 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 5 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cs302
b:60.7
occ:1.00
|
O
|
E:ILE26
|
3.0
|
27.2
|
1.0
|
O
|
E:CYS32
|
3.1
|
30.0
|
1.0
|
O
|
E:ASN29
|
3.2
|
29.3
|
1.0
|
O
|
E:LEU34
|
3.5
|
27.2
|
1.0
|
C
|
E:ILE26
|
4.0
|
28.6
|
1.0
|
C
|
E:CYS32
|
4.1
|
32.0
|
1.0
|
CB
|
E:CYS32
|
4.2
|
27.7
|
1.0
|
C
|
E:ASN29
|
4.2
|
28.6
|
1.0
|
CG2
|
E:ILE26
|
4.5
|
29.5
|
1.0
|
CA
|
E:CYS32
|
4.5
|
27.3
|
1.0
|
CA
|
E:PRO30
|
4.5
|
31.7
|
1.0
|
CA
|
E:SER27
|
4.5
|
28.5
|
1.0
|
O
|
E:SER27
|
4.6
|
32.6
|
1.0
|
N
|
E:CYS32
|
4.6
|
28.8
|
1.0
|
C
|
E:SER27
|
4.7
|
32.1
|
1.0
|
C
|
E:LEU34
|
4.7
|
27.2
|
1.0
|
O
|
E:PRO30
|
4.7
|
35.3
|
1.0
|
C
|
E:PRO30
|
4.7
|
33.8
|
1.0
|
N
|
E:SER27
|
4.7
|
29.0
|
1.0
|
O
|
E:HOH519
|
4.8
|
31.6
|
1.0
|
N
|
E:PRO30
|
4.8
|
31.4
|
1.0
|
CA
|
E:ILE26
|
4.9
|
26.7
|
1.0
|
SG
|
E:CYS32
|
4.9
|
27.7
|
1.0
|
O
|
E:HOH457
|
4.9
|
43.8
|
1.0
|
|
Caesium binding site 6 out
of 6 in 6l7g
Go back to
Caesium Binding Sites List in 6l7g
Caesium binding site 6 out
of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Bound)
Mono view
Stereo pair view
|
A full contact list of Caesium with other atoms in the Cs binding
site number 6 of Metallo Beta-Lactamase Fold Protein (Camp Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cs302
b:64.3
occ:1.00
|
O
|
F:ILE26
|
3.0
|
29.9
|
1.0
|
O
|
F:CYS32
|
3.1
|
33.4
|
1.0
|
O
|
F:ASN29
|
3.2
|
29.4
|
1.0
|
O
|
F:LEU34
|
3.6
|
31.8
|
1.0
|
C
|
F:ILE26
|
4.0
|
28.9
|
1.0
|
C
|
F:CYS32
|
4.1
|
34.7
|
1.0
|
CB
|
F:CYS32
|
4.2
|
28.6
|
1.0
|
C
|
F:ASN29
|
4.2
|
31.7
|
1.0
|
CA
|
F:CYS32
|
4.5
|
30.8
|
1.0
|
O
|
F:HOH476
|
4.5
|
40.0
|
1.0
|
CA
|
F:SER27
|
4.5
|
31.9
|
1.0
|
O
|
F:SER27
|
4.5
|
36.7
|
1.0
|
N
|
F:CYS32
|
4.5
|
33.6
|
1.0
|
CA
|
F:PRO30
|
4.6
|
40.7
|
1.0
|
O
|
F:PRO30
|
4.7
|
39.1
|
1.0
|
CG2
|
F:ILE26
|
4.7
|
31.4
|
1.0
|
C
|
F:SER27
|
4.7
|
32.5
|
1.0
|
N
|
F:SER27
|
4.8
|
29.5
|
1.0
|
C
|
F:PRO30
|
4.8
|
42.6
|
1.0
|
C
|
F:LEU34
|
4.8
|
32.1
|
1.0
|
N
|
F:PRO30
|
4.8
|
37.4
|
1.0
|
O
|
F:HOH505
|
4.9
|
41.1
|
1.0
|
CA
|
F:ILE26
|
4.9
|
26.5
|
1.0
|
SG
|
F:CYS32
|
4.9
|
29.8
|
1.0
|
|
Reference:
K.-Y.Lee,
D.-G.Kim,
B.-J.Lee.
Metallo Beta-Lactamase Fold Protein To Be Published.
Page generated: Wed Mar 3 13:04:36 2021
|