Caesium in PDB 6l7f: Metallo Beta-Lactamase Fold Protein (Camp Free)

Protein crystallography data

The structure of Metallo Beta-Lactamase Fold Protein (Camp Free), PDB code: 6l7f was solved by K.-Y.Lee, D.-G.Kim, B.-J.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.82 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.952, 120.752, 186.485, 90, 90, 90
R / Rfree (%) 19.7 / 24.8

Other elements in 6l7f:

The structure of Metallo Beta-Lactamase Fold Protein (Camp Free) also contains other interesting chemical elements:

Zinc (Zn) 12 atoms
Nickel (Ni) 12 atoms

Caesium Binding Sites:

The binding sites of Caesium atom in the Metallo Beta-Lactamase Fold Protein (Camp Free) (pdb code 6l7f). This binding sites where shown within 5.0 Angstroms radius around Caesium atom.
In total 6 binding sites of Caesium where determined in the Metallo Beta-Lactamase Fold Protein (Camp Free), PDB code: 6l7f:
Jump to Caesium binding site number: 1; 2; 3; 4; 5; 6;

Caesium binding site 1 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 1 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 1 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cs302

b:51.7
occ:1.00
 O A:CYS32 2.9 40.3 1.0
O A:ILE26 3.0 30.5 1.0
O A:ASN29 3.2 39.6 1.0
O A:HOH492 3.3 47.9 1.0
O A:HOH490 3.4 46.8 1.0
O A:LEU34 3.4 42.2 1.0
C A:ILE26 4.0 40.0 1.0
C A:CYS32 4.0 44.2 1.0
C A:ASN29 4.2 40.4 1.0
O A:HOH464 4.4 44.2 1.0
CB A:CYS32 4.4 38.0 1.0
O A:HOH405 4.5 46.3 1.0
O A:SER27 4.6 41.2 1.0
CG2 A:ILE26 4.6 41.5 1.0
CA A:CYS32 4.6 41.3 1.0
CA A:SER27 4.7 44.2 1.0
C A:LEU34 4.7 39.0 1.0
N A:SER27 4.7 41.8 1.0
N A:CYS32 4.7 40.2 1.0
C A:SER27 4.7 43.3 1.0
CA A:ILE26 4.8 36.6 1.0
CA A:PRO30 4.8 48.0 1.0
SG A:CYS32 4.8 38.0 1.0
O A:PRO30 4.9 51.4 1.0
N A:LEU34 4.9 43.0 1.0
C A:PRO30 4.9 47.9 1.0
N A:PRO30 4.9 43.3 1.0

Caesium binding site 2 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 2 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 2 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cs302

b:63.3
occ:1.00
 O B:CYS32 2.9 42.1 1.0
O B:ILE26 3.2 44.4 1.0
O B:ASN29 3.3 48.2 1.0
O B:LEU34 3.4 48.7 1.0
C B:ILE26 4.0 46.5 1.0
C B:CYS32 4.0 48.6 1.0
CB B:CYS32 4.3 45.7 1.0
C B:ASN29 4.4 43.5 1.0
O B:SER27 4.5 54.1 1.0
CG2 B:ILE26 4.5 43.5 1.0
CA B:CYS32 4.6 43.9 1.0
C B:LEU34 4.6 50.1 1.0
O B:HOH457 4.6 43.6 1.0
N B:SER27 4.7 45.1 1.0
CA B:SER27 4.7 47.4 1.0
C B:SER27 4.7 49.4 1.0
SG B:CYS32 4.7 45.6 1.0
N B:CYS32 4.7 45.5 1.0
CA B:ILE26 4.7 41.5 1.0
CA B:PRO30 4.8 52.5 1.0
N B:LEU34 4.9 53.0 1.0
O B:PRO30 4.9 48.4 1.0
C B:PRO30 5.0 54.6 1.0
N B:ASP33 5.0 53.1 1.0

Caesium binding site 3 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 3 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 3 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cs302

b:58.0
occ:1.00
 O C:CYS32 2.9 42.6 1.0
O C:ILE26 3.0 36.0 1.0
O C:LEU34 3.2 43.0 1.0
O C:ASN29 3.2 38.5 1.0
C C:ILE26 4.0 42.7 1.0
C C:CYS32 4.0 49.2 1.0
CB C:CYS32 4.3 40.1 1.0
C C:ASN29 4.3 41.4 1.0
O C:SER27 4.4 52.8 1.0
C C:LEU34 4.4 46.4 1.0
O C:PRO30 4.5 47.0 1.0
CA C:CYS32 4.6 43.8 1.0
CG2 C:ILE26 4.6 40.5 1.0
CA C:SER27 4.7 44.9 1.0
N C:CYS32 4.7 43.3 1.0
C C:SER27 4.7 48.7 1.0
N C:SER27 4.8 43.5 1.0
N C:LEU34 4.8 52.0 1.0
CA C:PRO30 4.8 44.0 1.0
C C:PRO30 4.8 46.9 1.0
SG C:CYS32 4.8 40.7 1.0
O C:HOH421 4.8 42.4 1.0
CA C:ILE26 4.9 36.0 1.0

Caesium binding site 4 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 4 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 4 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cs302

b:62.3
occ:1.00
 O D:CYS32 3.0 44.0 1.0
O D:ILE26 3.0 45.2 1.0
O D:LEU34 3.0 36.2 1.0
O D:HOH491 3.2 52.3 1.0
O D:ASN29 3.2 49.1 1.0
C D:ILE26 4.0 50.9 1.0
C D:CYS32 4.1 53.2 1.0
CB D:CYS32 4.2 42.3 1.0
C D:ASN29 4.2 45.7 1.0
C D:LEU34 4.4 43.6 1.0
O D:SER27 4.4 50.9 1.0
CA D:CYS32 4.6 45.2 1.0
CG2 D:ILE26 4.6 48.2 1.0
CA D:SER27 4.6 47.6 1.0
N D:CYS32 4.7 46.9 1.0
N D:SER27 4.7 49.5 1.0
O D:PRO30 4.7 44.8 1.0
C D:SER27 4.7 47.6 1.0
CA D:PRO30 4.7 53.3 1.0
N D:LEU34 4.8 51.7 1.0
SG D:CYS32 4.8 43.1 1.0
C D:PRO30 4.8 53.2 1.0
CA D:ILE26 4.8 45.6 1.0
N D:PRO30 4.9 47.7 1.0

Caesium binding site 5 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 5 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 5 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cs302

b:51.9
occ:1.00
 O E:HOH484 2.9 41.1 1.0
O E:ILE26 3.0 31.5 1.0
O E:CYS32 3.0 42.1 1.0
O E:ASN29 3.1 40.6 1.0
O E:LEU34 3.2 43.0 1.0
O E:HOH490 3.5 52.0 1.0
C E:CYS32 4.0 48.1 1.0
C E:ILE26 4.0 41.1 1.0
C E:ASN29 4.2 42.5 1.0
CB E:CYS32 4.3 42.4 1.0
C E:LEU34 4.4 39.6 1.0
O E:SER27 4.5 48.7 1.0
CA E:CYS32 4.6 46.2 1.0
CA E:PRO30 4.6 48.1 1.0
O E:PRO30 4.6 50.6 1.0
O E:HOH457 4.6 53.6 1.0
CA E:SER27 4.7 45.0 1.0
CG2 E:ILE26 4.7 40.0 1.0
SG E:CYS32 4.7 42.7 1.0
C E:SER27 4.7 45.5 1.0
N E:CYS32 4.8 45.1 1.0
C E:PRO30 4.8 50.2 1.0
N E:LEU34 4.8 48.9 1.0
N E:SER27 4.8 42.3 1.0
N E:PRO30 4.8 44.0 1.0
CA E:ILE26 4.9 38.6 1.0

Caesium binding site 6 out of 6 in 6l7f

Go back to Caesium Binding Sites List in 6l7f
Caesium binding site 6 out of 6 in the Metallo Beta-Lactamase Fold Protein (Camp Free)


Mono view


Stereo pair view

A full contact list of Caesium with other atoms in the Cs binding site number 6 of Metallo Beta-Lactamase Fold Protein (Camp Free) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cs302

b:60.0
occ:1.00
 O F:CYS32 2.9 49.5 1.0
O F:ILE26 3.1 45.9 1.0
O F:LEU34 3.2 52.6 1.0
O F:ASN29 3.2 41.8 1.0
C F:CYS32 4.0 55.3 1.0
C F:ILE26 4.0 45.2 1.0
CB F:CYS32 4.2 47.3 1.0
C F:ASN29 4.3 44.1 1.0
C F:LEU34 4.4 52.1 1.0
O F:SER27 4.5 52.5 1.0
CA F:CYS32 4.6 51.0 1.0
CG2 F:ILE26 4.6 46.3 1.0
O F:HOH418 4.6 52.4 1.0
O F:PRO30 4.6 51.7 1.0
O F:HOH466 4.7 54.3 1.0
N F:CYS32 4.7 46.9 1.0
C F:SER27 4.7 49.1 1.0
SG F:CYS32 4.8 45.7 1.0
CA F:PRO30 4.8 54.8 1.0
CA F:ILE26 4.8 45.4 1.0
CA F:SER27 4.8 45.8 1.0
C F:PRO30 4.8 59.5 1.0
N F:SER27 4.8 43.3 1.0
N F:LEU34 4.9 52.5 1.0
N F:PRO30 5.0 50.8 1.0

Reference:

K.-Y.Lee, D.-G.Kim, B.-J.Lee. Metallo Beta-Lactamase Fold Protein To Be Published.
Page generated: Wed Mar 3 13:04:36 2021

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